Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01219 ATGGGCGGCGGCACCGGCTCCAGCCTCGGCTCCCTCCTGCTCGAGCGTCTCTCTGTGGATTACAGTAAAAAATCCAAACTGGGCTTCACCATTTACCCTTCTCCTCAGGTCTCAACCGCCGTGGTGGAACCCTACAACAGTGTCCTCATTAACCTTCGTAAGACATGGGAGAAGCTTCAACTTGCTGCTAGGGTTATTGTTGCAATTGAGAATCCTCAGGATATCATTGTTCAATCCGCGAGGCCTTATGGTCAGAGAGCGATTCTGAAGTTTGCTCAGTACACTGGTGCTCATGCTATTGCTGGAAGGATGTTCTGTGCTTTGTGGACTTGTTCTTCTATAGAGAACCAGAGGAGGCGAAGCAACAAGAGGAGGAGGAAGTTGCAGCAGGTATACAAAGTGTCAGATATGGAACTTGTTAGGGTGCTTCCTAGTGTAGAAGATGAGGTCAATGTGGCATGTTTTCATCCTTTTGCTGGGGGAGGACTAGTTTATGGAACAAAGGAAGGAAAGCTTAGAGTCCTCCAGTATGACGGTGCTCATGCAGTGAGTGGGATTGGACCAAGTTACTTTCTTGAGGAGACCATCATTGGGGTTTAG 600 0.485 MGGGTGSSLGSLLLERLSVDYSKKSKLGFTIYPSPQVSTAVVEPYNSVLINLRKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAILKFAQYTGAHAIAGRMFCALWTCSSIENQRRRSNKRRRKLQQVYKVSDMELVRVLPSVEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVSGIGPSYFLEETIIGV 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01219 199 PRINTS Alpha-tubulin signature 8 20 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g01219 199 PRINTS Alpha-tubulin signature 21 32 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g01219 199 Gene3D - 32 143 - -
Cca08g01219 199 PRINTS Tubulin signature 13 34 IPR000217 GO:0005874|GO:0007017
Cca08g01219 199 PRINTS Tubulin signature 38 51 IPR000217 GO:0005874|GO:0007017
Cca08g01219 199 Pfam Tubulin/FtsZ family, GTPase domain 1 49 IPR003008 GO:0005525
Cca08g01219 199 SUPERFAMILY Ribosomal protein S2 46 105 IPR023591 -
Cca08g01219 199 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 130 199 - -
Cca08g01219 199 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 130 199 - -
Cca08g01219 199 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 49 IPR036525 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01219 Cca-Chr8 35715153 35716855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01219 49 128 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 68.750 5.65e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01219 - - gmx:100794246 135.191