Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01212 ATGTCCATAGAGGAGTTTCCTGCCTTGGTTGAGAAGGCAAAGACTGTGGAGAGATTGGAGGGTGTGGTAGCAGCGGCAAAGCTGCTAGAGTTCAGGAGCGATTATCTGGATCCAGGAGGGGAGACCAGCAGAGGGGACCCTATGACAGGCCTGTTCAGTCTTAGAGAGGTGTTGTCAGTAGGGGACCTCGTCCTGCTACTCCTCAGAGTGGAGCACCATCCGTGCGATGCTATAGATGTGGAGGAGCACATGTGGAGTGCTTTGAGGCCACCTAGGCCTACAGCTGTAGGGAGAGTTTTCTCTTTATCAGGTGTAGAGGCTTCCACTTCATCAGATTTGGTGAAGAGGAAGGGGAAGGCAACAGGGATAGAACTGGAATGTTCTAGTGAAGGCCATACAGTGGCGTTGGAGCTATATTTTTTTTATGGGGATGTTGGAGTTGCGAGCAATCTCAAAGCGGAATTATTAGCTATCTTACATGGAAACCAAAGTGCAGATTTTCTGTCAAAATTAGGGCCAAATTGTGGTGTTGCCATGCCTGAGGATTTACACCCGTTTGTGACGGCAGATGCGGTTGGAACAATGTTCCGTAGGATGGTTGAGATGATAAGCATGGCAGTTGCTCTTGTTGCCATTGTTGGTGGCACCGCCTACTATTACTATGTCACCAAGAAGCCTAAAGGGTGCTTGGATCCTGAGAACTTCAAGGAGTTTAAACTTGTTAAACGCACTCAACTCAGCCATAATGTTGCCACGTTCAGATTTGATCTTCCTACTCCTGATTCAGTATTGGGACTTCCTATTGGACAACATATCAGCTGCAGAGGGAAAGATAGTCTTGGTGAAGAAGTTGTGAAACCATATACTCCAACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTAAAGATGTATCCACAAGGTAGGATGTCTCATCACTTTAGGGAGATGCGTGAAGGTGATTACATGGCTGTGAAGGGACCAAAGGGACGTTTTAAGTACCAGCCCAACCAAGTAAGAGCTTTTGGTATGATTGCTGGTGGCACTGGCATCACCCCAATGTTTCAAGTTACAAGGGCTATATTAGAAAACTCACAGGACAAAACCAACATAAATTTGATATATGCAAATGTCACATATGATGACATTCTTTTGAAGGAAGAGCTGGATGCTTTTGCCATTGCTTTCCCGGATCGATTCAAAGTTTATTATGTTTTAAATCAGCCACCAGAAGTATGGGATGGTGGTGTTGGATTTGTGTCTAAGGAAATGATCCAAACACATTGCCCTGCACCAGCACCAGATATTAAGATGCTAAGGTGTGGACCACCTCCAATGAACAAGGCTATGGCTACTCATCTTGAAGCTCTTGGATACAGTCCCCAAATGCAGTTTCAGTTTTAA 1410 0.4511 MSIEEFPALVEKAKTVERLEGVVAAAKLLEFRSDYLDPGGETSRGDPMTGLFSLREVLSVGDLVLLLLRVEHHPCDAIDVEEHMWSALRPPRPTAVGRVFSLSGVEASTSSDLVKRKGKATGIELECSSEGHTVALELYFFYGDVGVASNLKAELLAILHGNQSADFLSKLGPNCGVAMPEDLHPFVTADAVGTMFRRMVEMISMAVALVAIVGGTAYYYYVTKKPKGCLDPENFKEFKLVKRTQLSHNVATFRFDLPTPDSVLGLPIGQHISCRGKDSLGEEVVKPYTPTTLDTDVGYFELVVKMYPQGRMSHHFREMREGDYMAVKGPKGRFKYQPNQVRAFGMIAGGTGITPMFQVTRAILENSQDKTNINLIYANVTYDDILLKEELDAFAIAFPDRFKVYYVLNQPPEVWDGGVGFVSKEMIQTHCPAPAPDIKMLRCGPPPMNKAMATHLEALGYSPQMQFQF 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01212 469 PANTHER NADH-CYTOCHROME B5 REDUCTASE 198 469 IPR001834 GO:0016491
Cca08g01212 469 SUPERFAMILY Riboflavin synthase domain-like 226 339 IPR017938 -
Cca08g01212 469 Pfam Oxidoreductase NAD-binding domain 346 452 IPR001433 GO:0016491
Cca08g01212 469 Pfam Oxidoreductase FAD-binding domain 238 336 IPR008333 -
Cca08g01212 469 Gene3D Translation factors 226 325 - -
Cca08g01212 469 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 233 337 IPR017927 GO:0016491
Cca08g01212 469 Gene3D - 326 469 IPR039261 -
Cca08g01212 469 CDD cyt_b5_reduct_like 238 469 - -
Cca08g01212 469 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 383 394 IPR001709 GO:0016491
Cca08g01212 469 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 345 364 IPR001709 GO:0016491
Cca08g01212 469 PRINTS Cytochrome B5 reductase signature 345 364 - -
Cca08g01212 469 PRINTS Cytochrome B5 reductase signature 286 293 - -
Cca08g01212 469 PRINTS Cytochrome B5 reductase signature 264 275 - -
Cca08g01212 469 PRINTS Cytochrome B5 reductase signature 383 394 - -
Cca08g01212 469 PRINTS Cytochrome B5 reductase signature 439 447 - -
Cca08g01212 469 PRINTS Cytochrome B5 reductase signature 322 336 - -
Cca08g01212 469 PANTHER NADH-CYTOCHROME B5 REDUCTASE 198 469 - -
Cca08g01212 469 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 326 464 IPR039261 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01212 Cca-Chr8 35321526 35337666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01212 218 469 NADPH P450 reductases AT5G17770 79.762 3.45e-154 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01212 K00326 - gmx:100812559 525.013