Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01202 ATGACAGACCCACGGAGCGGCTTCAACCGCGCTTCCAGAACCTTCCACAGCCTCGAGCCCCCTCTTCTCCTCCCTCCGCCCAATGCCACCGTCTCCGCCGCCACCTACGCCATCTCCCTCCGCCGCAACTCCCCCTGGCCGGACTTCACCACCGCTCTCATCGACGCCGCCACCGGCCACCGCATCTCCTACGGCGAGCTCATCCACCGCGCCCAAACCCTAGCCTCCAACCTCGCCTCCGTCCTCAAACTCTCGAAAAACGACACCGCACTGATCCTCTCCCCAAACCTTCTCCAAGTTCCAATCCTCTGCTTCGCGCTCCTCTCCCTTGGCGTGGTCCTCTCCCCGGCGAACCCTCTCTCCACGCGCTCCGACCTCACGCGCCTCCTCCACCTCAGCAAGCCCTCCATTGTCTTCGCAGCAGCCTCCGCCGCGGAGAAAGCGCGCGAGCTTGGCCTCCGAGTGGTGCTGCTCGACTCGCCCGAGTTCGACTCGCTCATCAGGACTCGTACGGACTCTCCGAGTGAACCGGCGCGGGTGAGTCAATCCGACGTGGCGGCCATCCTTTACTCGTCGGGGACGACGGGGATGGTGAAGGGCGTGGCGCTGACGCACCGTAACTTGACGGCGTTGGCGGTGGAACACGACGCCGTTCGCGCGAAGAGAGAGGAGCCCGTGGTTTACCTCTTCACGGTGCCGTTTTTCCACGTGTACGGGTTCACGTTCACGGTGAAGGCGATGGTGACGTTGGACACGGTGGTGGTGATGGAGAGGTTTAGTCTTCGGGGAATGCTGAGCGCCGTGGAGAGGTTTGGCGTGACGCATGCGGCGGTGGTGCCGTCTCTGGTGGTGGCTCTGACGAAGGACGGCGTCACCGACGGGTACAGTTTGAAGTCGTTGGAATCCGTGGTGTGCGGTGGGGCTCCTCTGGTAAAGGAAACTGCTCATGCTTTCAACGCCAAGTTCCCCAACGTCGCCATCATCCAGGGATACGGTTTAACGGAATCTGCAATAACCCGAACCGCTCCAGAGGATGCTAATCGAACGGGAACAACAGGTAGATTGTTAGCAGAGATGGAAGCCAAAATTGTGAATCAAAACAACGGGGAAGCCTTGCTTCCTGGTCAACAAGGAGAACTTTGGGTTAAAGGACCCTACGTTATGAAAGTAGGTTATGTGGGTGACCCAGAAGCAACTTCAGCAACTTTGGTGGATGGGTGGTTAAGGACTGGGGACCTCTGTTATTTTGACAATGAAGGTTTCATATATGTTGTGGACAGGTTAAAAGAAATTATCAAATACAAGGGCTACCAGGTTGCTCCAGCAGAGCTAGAGCAGTTGCTCGTGTCTCACCCAGAGATAATTGATGCCGCAGTTATTCCTTACCCTGATGAAGAAGCTGGCCAGGTACCTATGGCGTTTGTGGTAAGACAACCCCAAAGTTCTCTTCACAAAGCACAAATAATTGATTTTGTCGCCAAACAGGTTGCACCGTACAAGAAAATAAGGCGTGTAGCATTTGTTGATTCCATACCAAAGAATGCTGCGGGAAAGATACTTAGGAAGGACTTGATCTTTTGTTCGGgtgaggaaaacccagctttgattcttggccattttgagccaatcttcagAGAGACTTTCCACCACGGCACTCGTTCCCACCGCCGTCAACACCAATGGCAGACGAATCCTCTCTTCGCGTCTCAGATCTCTGCCGAGGAGTCCGATGCCAAAGAGCTCGTTCTCACATTGGATCACTCCAACTTCCACCACACTGTCAGCAAGCATGATGTTGTCGAGTTCTACGCACCATGGTGTGGCCTCTGTAAGAAGCTTGCTCCCGAGAAACAAAGTGGTCCTGCTTCAACTGAAATTAAATCTGCTGATGAAGCTACTGCATTTATTGGTGAAAACAAAGTTGCTATTAGAAATACAACTACTGTAGAAAATTCAAATTGCAACAGAGTGAGAAAAGAAGAGGTTACTAAAAGCTGA 1998 0.529 MTDPRSGFNRASRTFHSLEPPLLLPPPNATVSAATYAISLRRNSPWPDFTTALIDAATGHRISYGELIHRAQTLASNLASVLKLSKNDTALILSPNLLQVPILCFALLSLGVVLSPANPLSTRSDLTRLLHLSKPSIVFAAASAAEKARELGLRVVLLDSPEFDSLIRTRTDSPSEPARVSQSDVAAILYSSGTTGMVKGVALTHRNLTALAVEHDAVRAKREEPVVYLFTVPFFHVYGFTFTVKAMVTLDTVVVMERFSLRGMLSAVERFGVTHAAVVPSLVVALTKDGVTDGYSLKSLESVVCGGAPLVKETAHAFNAKFPNVAIIQGYGLTESAITRTAPEDANRTGTTGRLLAEMEAKIVNQNNGEALLPGQQGELWVKGPYVMKVGYVGDPEATSATLVDGWLRTGDLCYFDNEGFIYVVDRLKEIIKYKGYQVAPAELEQLLVSHPEIIDAAVIPYPDEEAGQVPMAFVVRQPQSSLHKAQIIDFVAKQVAPYKKIRRVAFVDSIPKNAAGKILRKDLIFCSGEENPALILGHFEPIFRETFHHGTRSHRRQHQWQTNPLFASQISAEESDAKELVLTLDHSNFHHTVSKHDVVEFYAPWCGLCKKLAPEKQSGPASTEIKSADEATAFIGENKVAIRNTTTVENSNCNRVRKEEVTKS 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01202 665 CDD 4CL 50 524 - -
Cca08g01202 665 Pfam AMP-binding enzyme C-terminal domain 443 518 IPR025110 -
Cca08g01202 665 SUPERFAMILY Thioredoxin-like 582 616 IPR036249 -
Cca08g01202 665 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 526 - -
Cca08g01202 665 Gene3D Glutaredoxin 567 631 - -
Cca08g01202 665 Gene3D - 28 429 IPR042099 -
Cca08g01202 665 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Cca08g01202 665 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 5 526 - -
Cca08g01202 665 Pfam AMP-binding enzyme 50 434 IPR000873 -
Cca08g01202 665 Pfam Thioredoxin 582 618 IPR013766 -
Cca08g01202 665 Gene3D - 430 527 IPR045851 -
Cca08g01202 665 SUPERFAMILY Acetyl-CoA synthetase-like 51 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01202 Cca-Chr8 34959755 34986372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01202 1 524 Monolignol Biosynthesis Gene Families AT5G63380 49.908 5.52e-180 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01202 - - gmx:100801143 779.245