Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01201 ATGAACTCACCAGACACAGACCCTAGGAGCGGCTTCAACCGCGCTTCCAGAACCTTCCACAGCCTCAAACCCCCTCTCCTCCTCCCTCCGCCCGACGCCACCGTCTCCGCCGCCACCTACGCCATCTCCCTCCGCCGCAACTCCCCCTGGCCGGACTCCACCACCGCTGTCATCGACGCCGCCACTGGCCACCGCATCTCCTACGGCGAGCTCATCCACCGCGCCCAAACCCTAGCCTCCAACCTCGCCTCCGTCCTCAAACTCTCGAAAAACGACACCGCACTGATCCTCTCCCCAAACCTTCTCCAAGTTCCAATCCTCTGCTTCGCGCTCCTCTCCCTTGGCGTGGTCCTCTCCCCGGCGAACCCTCTCTCCACGCGCTCCGACCTCACGCGCCTCCTCCACCTCAGCAAGCCCTCCATCGTCTTCGCAGCGGCCTCCGTCGCGGAGAAAGCGCGCGAGCTTGGACTCCGAGTCGTGCTGCTCGACTCGCCCGAGTTCGAGTCGCTCACCAGGACTCCTACGGACTCTCCGAGTGAACCGGCGCGAGTGCGTCAATCCGACGTGGCGGCGATCCTTTACTCGTCGGGGACGACGGGGATGGTGAAGGGCGTGGCGCTGACGCACCGTAACTTGACGGCGTTGGCGGCGGCACAAGACGCCGTTCGCGCGAAGAGAGAGGAGCCCGTGGTGTACCTCTTCACGATGCCGTTTTTCCACGTGTACGGGTTCACGTTCACggtgaaggcgatggtgacgttggacacggtggtggtgatggagaggtTTAGTCTTCGGGGGATGCTGAGCGCCGTGGAGACGTTCGGCGTGACGCATGCGGCGGTGGTGCCGGCGCTGTTGGTGGCTCTGACGAAAGACGGCGCCACTGAGGGGTACGATTTGAAGACGTTGGAGACGATTGCGTGCGGTTCGGCTCCGCTGGGAAAGGAAGTCTTTGAGGCTTTCAAAGCCAAGTTCCCCAACGTCGTCGTCGTACAGGGATACGGTTTAACTGAGTCAACTGCTGCGGTAGTTCGAACGAGTCCAGAGGAGCCTCATCGATTGGGAACAACAGGTAGATTGAATGCAGGAATTGAAGCCAAAATTGTTAACCCAAACACTGGGGAAGCCATGCTTCCTGAACAACAAGGAGAACTCTGGATTAAAGGACCTTTAGTTATGAAAGGCTATGTGGGTGACCCAGAAGCAACTTCAGCAACCTTGGTGGATGGGTGGTTAAGGACTGGGGACCTCTGTTATTTCGATAAAGAGGGTTTCTTGTATGTTGTAGATAGGTTGAAAGAGTTGATCAAATACAAAGGCTACCAGGTTGCTCCTGCAGAGCTAGAACAGTTGCTAATGTCACACCCACAGATAAATGATGCCGCAGTTATTCCATACCCTGATGAAGAAGCTGGCCAGGTGCCCATGGCATTAGTGGTAAGACAACCCCAAAGTTCTCTTCACAAAGCACAAATAATTGATTTTGTCGCCAAACAGGTTGCATCATACAAGAAAATAAGGCGTGTAGTATTTGTCGATTCATTACCAAAGAATGCTGCTGGGAAATTAATGAGAAAGGAATTAAGTAAACTTGCTTTCTCTAGGTTATAA 1614 0.539 MNSPDTDPRSGFNRASRTFHSLKPPLLLPPPDATVSAATYAISLRRNSPWPDSTTAVIDAATGHRISYGELIHRAQTLASNLASVLKLSKNDTALILSPNLLQVPILCFALLSLGVVLSPANPLSTRSDLTRLLHLSKPSIVFAAASVAEKARELGLRVVLLDSPEFESLTRTPTDSPSEPARVRQSDVAAILYSSGTTGMVKGVALTHRNLTALAAAQDAVRAKREEPVVYLFTMPFFHVYGFTFTVKAMVTLDTVVVMERFSLRGMLSAVETFGVTHAAVVPALLVALTKDGATEGYDLKTLETIACGSAPLGKEVFEAFKAKFPNVVVVQGYGLTESTAAVVRTSPEEPHRLGTTGRLNAGIEAKIVNPNTGEAMLPEQQGELWIKGPLVMKGYVGDPEATSATLVDGWLRTGDLCYFDKEGFLYVVDRLKELIKYKGYQVAPAELEQLLMSHPQINDAAVIPYPDEEAGQVPMALVVRQPQSSLHKAQIIDFVAKQVASYKKIRRVVFVDSLPKNAAGKLMRKELSKLAFSRL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01201 537 Pfam AMP-binding enzyme 51 439 IPR000873 -
Cca08g01201 537 Gene3D - 435 535 IPR045851 -
Cca08g01201 537 CDD 4CL 47 529 - -
Cca08g01201 537 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 8 532 - -
Cca08g01201 537 Gene3D - 31 434 IPR042099 -
Cca08g01201 537 Pfam AMP-binding enzyme C-terminal domain 448 523 IPR025110 -
Cca08g01201 537 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 532 - -
Cca08g01201 537 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Cca08g01201 537 SUPERFAMILY Acetyl-CoA synthetase-like 52 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01201 Cca-Chr8 34875135 34897455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01201 7 533 Monolignol Biosynthesis Gene Families AT5G63380 49.360 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01201 - - gmx:100801143 801.201