Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01198 ATGCTCACTATATGCTCATACACATCTCCTCTCCTAAGAGTCTCAACTTGGCACTCCGCACAATGGGCGTACCTCGTCAATTCCCTTAGTTGTTGTCAATGCAAGCATACCGTTCTCACACCCTCCCAGGTTTTTGCCCCCACTTCACTCCCATACCTTCATTTTATTTTTCTGTCTCTCTCTGTCGGTATCATGAGACCAGAAAAGAACCCATTAGATCTTAACAACTTGCCTGATGAGTACTTTAGAGATGGCAAACAACTCCTCCAAGATACTTCCTCATCCGACTGCAGGAAAAAGCAAGACAGCTTCAAGGATGCAATCGAAGAGTGTGAGAAGGTCTACGAGTGTAGATTTTGTTCCCTTAAGTTCTGCAAGTCACAGGCTCTTGGGGGACACATGAACCGCCATCGCCAAGAGAGGGAAACAGAGACCCTGAACCATGCTCGTCAGCTGGTCTACCGTAACGATCATAGCATAAGCACCCAAGCTGCCCCCCAGCTAGGATGCTGTCAACCAATAGCATTAGGGGGCTATCCTCATCCTGCAAGCAACATGGGTGACCCGACAATGCGTCTAAGATTCCCAAGATACATGTCTGGAGCTTCATCCTCACTGCACATGCCAACACAACCATCACTACCGCACCAACACTTTCTATATGCCTCACCTCCATTGCCCTATTCTCATGCAGTTAACGATTACTATGTGGGTCACGTTCTTACCAGCGACTATACTTGCATTGGGGCACCCGTAGGACAAGCATTCGTTGGTGGTGGCAAGGACAGGTCACTGCAGGAGGAAGCATTGAATTGGGGAAGGGGCCACTCAGTAACACCGCAACAGCGATTGGATACTCACTCAGCGATCAATCAGTTTTAG 882 0.4853 MLTICSYTSPLLRVSTWHSAQWAYLVNSLSCCQCKHTVLTPSQVFAPTSLPYLHFIFLSLSVGIMRPEKNPLDLNNLPDEYFRDGKQLLQDTSSSDCRKKQDSFKDAIEECEKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVYRNDHSISTQAAPQLGCCQPIALGGYPHPASNMGDPTMRLRFPRYMSGASSSLHMPTQPSLPHQHFLYASPPLPYSHAVNDYYVGHVLTSDYTCIGAPVGQAFVGGGKDRSLQEEALNWGRGHSVTPQQRLDTHSAINQF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01198 293 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Cca08g01198 293 Gene3D Classic Zinc Finger 91 167 - -
Cca08g01198 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Cca08g01198 293 PANTHER ZINC FINGER PROTEIN JAGGED 65 268 IPR031113 GO:0007275
Cca08g01198 293 PANTHER ZINC FINGER PROTEIN JAGGED 65 268 IPR045320 GO:0003700
Cca08g01198 293 SUPERFAMILY beta-beta-alpha zinc fingers 112 143 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01198 Cca-Chr8 34765546 34772983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01198 68 255 C2H2 Transcription Factor Family AT1G13400 40.845 9.41e-26 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01198 - - vra:106776856 313.538