Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01196 ATGAAAACTTTCTCTTCAATTCAACCACCCCACCATCTTCATTCTACAAGATTTTTCTCTCACACTACAACAAGGACTCAACTTTCTTTTCCTACAAAGGTCTTCTTTTGCCTGGCAAAATCTGGCATAGATGGCTCATTGGATTTAAAAGTGGTGTCTCCCACTTTGTTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGTATTAACCTTGTTTTTGAAGAAACATGGTTTGAGGAAAGCGCTTGCTGCTAGAACCATCAACAAGTCAGATCTTTTCATTGATCACCTTGTCTCAAAGCTTCATTCTAAGCACAAATCTTGGTATCTTGCAGGGAGAGAGCTTACAACTCTGGAGATCAGGGACGCTCTTATCCCTTATCTTGAATCTCTCTTTAAAGAGCATGGAGCCATTCTAGTGGATATAGTGGAAAGCTATCCAAATCCACCTGTTAAGGATAAATCAGCTGTGCCAATTCCTCCTTCTAGTCCAGTGTTAGACTCTAAGAAGCTTAAAGCTGTGTCTAGAGTGAGTGAGGTAGACACAGATGGTGGCAGTCTTCGCCCTCATATTGTCTATCTTATGGAACTTGGTATGGATATTGAGCAAATTAGGGGTATCACACGCAGATTCCCATCTTTTGCCTACTATAGCTTGGAGGGTAAAATTAAGCCAGTGGTTGAGTTTTTTCTTGAACTGGGAGTGCCAAAAGAGAACATTCCCACTATCCTCATTAAAAGGCCTCAATTATGTGGGATCAGTCTATCTGAAAATCTTAAACCCACCATGAAGTTCTTTGAATCTTTGGGTGTTGACAAGGAACAATGGCCAAAGGTGATCTATCGCTTCCCAGCCTTGCTAACTTATAGCAGGCAGAAAGTGATGGAAAGCATATATTTTCTCCTTGAATTGGGCCTCTCAGAAGAGAGTATAGGTAAGATTTTAACTCGCTGCCCCAATATTGTTAGTTACAGTGTAGAGGACAATCTCCGACCCACGGCTAAGTACTTCCGTTCTTTGGGAGTTGATGTTGGAATTCTTCTTTTCAGATGCCCACAGAATTTTGGTCTTAGTATTGAGGCCAACCTAAAGCCTGTAACAGAATATTTCTTGGAGAGGGGTTACACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACTTTCAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTGTGACCACAGGCTACCCAAAATCTGAACTAGTGAAGTTCCCTCAATATTTTGGATACAGTTTAGAGGAAAGGATTAAGCCTAGATTTGCAATTTTGAAAAAATCTGGAGCAAAGTTACTGCTGAACCAGGTTCTTTCACTGTCAAGAAGCAACTTTGAGGAAGTCTTGGAAAAGAAAATGAAGAAAATGCAAGTTAGTTAG 1416 0.4047 MKTFSSIQPPHHLHSTRFFSHTTTRTQLSFPTKVFFCLAKSGIDGSLDLKVVSPTLLAAEKEEAKAVLTLFLKKHGLRKALAARTINKSDLFIDHLVSKLHSKHKSWYLAGRELTTLEIRDALIPYLESLFKEHGAILVDIVESYPNPPVKDKSAVPIPPSSPVLDSKKLKAVSRVSEVDTDGGSLRPHIVYLMELGMDIEQIRGITRRFPSFAYYSLEGKIKPVVEFFLELGVPKENIPTILIKRPQLCGISLSENLKPTMKFFESLGVDKEQWPKVIYRFPALLTYSRQKVMESIYFLLELGLSEESIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGVDVGILLFRCPQNFGLSIEANLKPVTEYFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFVTTGYPKSELVKFPQYFGYSLEERIKPRFAILKKSGAKLLLNQVLSLSRSNFEEVLEKKMKKMQVS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01196 471 PANTHER CGI-12 PROTEIN-RELATED 23 469 IPR003690 GO:0003690|GO:0006355
Cca08g01196 471 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Cca08g01196 471 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Cca08g01196 471 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Cca08g01196 471 SMART mt_12 167 199 IPR003690 GO:0003690|GO:0006355
Cca08g01196 471 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Cca08g01196 471 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Cca08g01196 471 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Cca08g01196 471 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Cca08g01196 471 Gene3D Transcription termination factor 3, mitochondrial 247 467 IPR038538 -
Cca08g01196 471 Pfam mTERF 349 458 IPR003690 GO:0003690|GO:0006355
Cca08g01196 471 Pfam mTERF 189 371 IPR003690 GO:0003690|GO:0006355
Cca08g01196 471 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 23 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01196 Cca-Chr8 34720437 34724106 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca08g01196 mTERF 3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01196 K15032 K12177 gmx:100781900 815.839