Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01195 ATGTTCCGAGGTGGTTCAATGAGACGTTTTTGTTACCTTTATCTTGTTGTTCTTTCATTGTTTTTGTTCATACCAAACACTTATGAATTAGAAGCATCTCAGACTGAAGCCTTGTTGCAGTTAAGAGTTTATCTAGAGTACCCCTCTTCTTTGCAAATTTGGGAGAATTACAATGGGGACCTATGCAGCCTTCCTCCCTCTGCAAACTTGAGTATTAAATGCGAAGGTGATGAGGTAACTGAGCTTAAAATTATGGGTGAAAAGTCTGAGAAGCCATCACGGTTCAATGGATTTGCAGTTCCTAATCAGACCCTGTCCATGAATTTCTCCGTTGATTCATTTTTCACCACTTTGACAAGGTTGACCAGCATAAGGGTTCTTAGCTTGGTGTCCTTGGGGATTTGGGGGCCACTCCCTGAGAAGATTCACCGTTTCTCTTTGCTTGAAGTTTTAGACTTGAGCTGTAATTTCTTATTTGGAGCCATCCCACCAAAAATGTCCACCATGGTAAAGCTTCAAGCACTGACACTTGATGACAATTATTTTAACACCACTATGCCTGATTGGTTTGATTCATTGTCTAATCTAAACATCCTGAGTGTGAAGAGCAATGGCTTAAAGGGTTCATTCCCCTCCTCACTTTGCAAAATTGAGACACTTGAAGTTGTTTCCTTGTCACACAATGAGTTGTCTGGGGAATTGCCTGGTCTCAGTTCTCTCGCTGGCCTACATCTGCTGGATATAAGAGAAAACCAATTAGAATCTGAACTACCATTGTTGCCTAAATCAGTGATCACAGTTCTTCTTAGCAATAACTCATTCTCAGGAGAGATACCTAAGCAGTTTGGTGAACTGGATCAGCTTCAACATCTAGATCTTTCTTCAAATCATCTCAGTGAGACACCCCCATCTACCTTGTTTTCTCTGCCTAAAATAAGTTATTTGAATCTGGCAAGCAATGTGCTTAGTGGGACCCTCCCAGGAAAACTTAATTGTGGGAGTAAACTTGGGTTTGTGGACATTTCTGGTAACAAGTTAAGTGGTGGACTTCCTTCTTGCTTGGCCAATACTTCTGATAGTAGAGTTGTTAGATATGCTGGAAACTGTTTATCTGTTGATACTCAGAACCAGCATAGAGGGTCTTATTGTAAAAAATCTAGCTCTGGATGGAAGAGCTTTAAGACATGGTTAGTAGTTGTAGTAACGACCATTATTGTTGGATTTGTTCTTGTGCTTTTGGTGTCTGGAGTATTCTTATGGAAAAAATGTCGCCCCAGAAAGATTACCGGGAAGGATCTAAAGATTGTTCAAGATAACTCCTCAAGGACCTCAACTGGGGTTTCATCTGAGATCCTTGCAAATGCCAGATTCATTTCTCAAACAGTGAAGCTAGGGACACAAACTACTCTGACCTGTCGACAATTTTCGATAGAAGAATTGAAGGAAGCCACCAGAAACTTTGATTTGTCAAGTTATATTGGTAAAGGCTCCATAGGAAAGCTGTACAAAGGTAAACTAGAGAATGGATCCTATGTGGCGATACGTTCTCTGGCTCTGTCAAAGAAATGCTCAATACAAAATCTTAAAGCCAAATTGGATTTACTCTCAAAGCTTCAACATCCAAATTTGGTGAGCCTTTTGGGCCATTGTATTGAAGGTGGTGGACTTGATGATTCCAATTCTCACAAACTTCATCTTGTATATGAGTATGTGCCAAATGGGAATTATCGTACCCATCTGTCAGAATTTTCTGTAGAGAAGGCACTTAAGTGGTCTGATAGATTGACAATTTTAATTGGAGTTGCTAAGGCAGTGCATTTCTTACATACTGGTGTCATACCTGGCTGTTTTAGTAACCAACTAAAGACAAAAAATATCTTACTTGATGAACACCGCATTCCAAAACTAAGTGACTATGGTATGTCCATCATCACAGAAGATATTGAAAACTTTGAGGCAAAGGGTGAGAAGCCAAAATCAAGCGTGAGGACAAAAGCGGAGGACGATGTCTATAATTTTGGATTCATATTGTTTGAATCACTTGTTGGACCAATAGCATGCGACAAAGGCGAAACATTTTTTCTAAATGAAAAGGCATCCTTTGGCAGTCAAGATGGTAGAAGAAAGATTGTGGATCCTATAGTGTTAACCACTTGCTCTCAAGAGTCATTATCAATTGCAATATCAATCACAACCAAATGCATATCTCCAGAATCTTCAATTCGTCCCTCCTTTGAGGATGTTCTATGGAACTTGCAGTATGCAGCTCAAGTCCAAGCCACAGCAGATGCAGACCAGAAATCAGATTAA 2310 0.3996 MFRGGSMRRFCYLYLVVLSLFLFIPNTYELEASQTEALLQLRVYLEYPSSLQIWENYNGDLCSLPPSANLSIKCEGDEVTELKIMGEKSEKPSRFNGFAVPNQTLSMNFSVDSFFTTLTRLTSIRVLSLVSLGIWGPLPEKIHRFSLLEVLDLSCNFLFGAIPPKMSTMVKLQALTLDDNYFNTTMPDWFDSLSNLNILSVKSNGLKGSFPSSLCKIETLEVVSLSHNELSGELPGLSSLAGLHLLDIRENQLESELPLLPKSVITVLLSNNSFSGEIPKQFGELDQLQHLDLSSNHLSETPPSTLFSLPKISYLNLASNVLSGTLPGKLNCGSKLGFVDISGNKLSGGLPSCLANTSDSRVVRYAGNCLSVDTQNQHRGSYCKKSSSGWKSFKTWLVVVVTTIIVGFVLVLLVSGVFLWKKCRPRKITGKDLKIVQDNSSRTSTGVSSEILANARFISQTVKLGTQTTLTCRQFSIEELKEATRNFDLSSYIGKGSIGKLYKGKLENGSYVAIRSLALSKKCSIQNLKAKLDLLSKLQHPNLVSLLGHCIEGGGLDDSNSHKLHLVYEYVPNGNYRTHLSEFSVEKALKWSDRLTILIGVAKAVHFLHTGVIPGCFSNQLKTKNILLDEHRIPKLSDYGMSIITEDIENFEAKGEKPKSSVRTKAEDDVYNFGFILFESLVGPIACDKGETFFLNEKASFGSQDGRRKIVDPIVLTTCSQESLSIAISITTKCISPESSIRPSFEDVLWNLQYAAQVQATADADQKSD 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01195 769 SUPERFAMILY Protein kinase-like (PK-like) 468 752 IPR011009 -
Cca08g01195 769 Gene3D Transferase(Phosphotransferase) domain 1 571 769 - -
Cca08g01195 769 Gene3D Ribonuclease Inhibitor 31 262 IPR032675 -
Cca08g01195 769 PANTHER INACTIVE LRR RECEPTOR-LIKE KINASE 5 769 - -
Cca08g01195 769 SUPERFAMILY L domain-like 103 371 - -
Cca08g01195 769 Pfam Protein tyrosine and serine/threonine kinase 489 749 IPR001245 GO:0004672|GO:0006468
Cca08g01195 769 Pfam Leucine rich repeat 266 322 IPR001611 GO:0005515
Cca08g01195 769 Pfam Leucine rich repeat 171 230 IPR001611 GO:0005515
Cca08g01195 769 ProSiteProfiles Leucine-rich repeat profile. 287 308 IPR001611 GO:0005515
Cca08g01195 769 PANTHER OS07G0166700 PROTEIN 5 769 IPR045272 GO:0004714|GO:0006468
Cca08g01195 769 ProSiteProfiles Protein kinase domain profile. 487 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01195 769 Gene3D Phosphorylase Kinase; domain 1 449 570 - -
Cca08g01195 769 Gene3D Ribonuclease Inhibitor 263 388 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01195 Cca-Chr8 34322321 34328563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01195 7 700 Miscellaneous Gene Families AT5G14210 55.524 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Cca08g01195 PK_Tyr_Ser-Thr 1.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01195 - - gmx:100780663 1298.49