Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01189 ATGGAAGAATCAAGTGAATTGCAATCAGAAGAAAATAAAGTCTCCAATGAGAAAAATAAGAAAAGAAAACTGAAAACACCGGCCCAACTTTTGGCCTTGGAGAAATTTTATAATGAGAAAAAGTATCCCACAGAGGAAATGAAATCAGAACTTGCTGATGAGTTAGGATTGACAGAAAAGCAAATATCTGGATGGTTCTGCCACAGAAGGTTAAAAGATAAAAGAATGATGAAAGATGAAGCCGTTGCTAATGGACGGCAAGATCGTTCAAGCGGTGTCATCCAGGATCGTGGCAGTGGACTTGGGCAAGATTCATGTGGAAGCAGTAAACATGCTGATTACAGGTACTTGGATCCTAAGGAGGTTGAGAGCCATGGCCTCTACAATCACGAATTTTCAGTTGCAGATATGACTCATGGACGTAGGAGCCGTTATCCTGAAAATGTTAGCGGAGTGGATGAGACATCATCTGAGAGCAGCTCATATTTGCAAGAAAGGTTGTTTTCTCAAGGATATTTAAAAGTGAAGGGAGAGATAGAACATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGCATTATCTGGAAGATGGTCCAGTACTTGGTATAGAGTTTGACACACTTCCTCCAGGGGCATTTGAGTGCCAAACTGCAGATCCAGCTAATGGGAATTCAAGCAGATGTCTCCTCAGTACTGATACCAATAAGGTCAATGACAATCTCATGATGTTATTTATAAGCATCAGAACCAAGTTACCTTAA 765 0.4052 MEESSELQSEENKVSNEKNKKRKLKTPAQLLALEKFYNEKKYPTEEMKSELADELGLTEKQISGWFCHRRLKDKRMMKDEAVANGRQDRSSGVIQDRGSGLGQDSCGSSKHADYRYLDPKEVESHGLYNHEFSVADMTHGRRSRYPENVSGVDETSSESSSYLQERLFSQGYLKVKGEIEHAAITAVKKQLGRHYLEDGPVLGIEFDTLPPGAFECQTADPANGNSSRCLLSTDTNKVNDNLMMLFISIRTKLP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01189 254 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Cca08g01189 254 SMART HOX_1 18 80 IPR001356 GO:0003677
Cca08g01189 254 MobiDBLite consensus disorder prediction 7 26 - -
Cca08g01189 254 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Cca08g01189 254 Gene3D - 8 92 - -
Cca08g01189 254 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 170 - -
Cca08g01189 254 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 170 224 - -
Cca08g01189 254 MobiDBLite consensus disorder prediction 1 26 - -
Cca08g01189 254 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 170 - -
Cca08g01189 254 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 170 224 - -
Cca08g01189 254 MobiDBLite consensus disorder prediction 88 106 - -
Cca08g01189 254 CDD homeodomain 20 77 IPR001356 GO:0003677
Cca08g01189 254 MobiDBLite consensus disorder prediction 81 109 - -
Cca08g01189 254 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01189 Cca-Chr8 34115431 34118564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01189 3 218 Homeobox Transcription Factor Family AT4G03250 54.894 7.71e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Cca08g01189 Homeodomain 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01189 - - gmx:100803515 373.244