Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01172 ATGGAGGAAGCGACGGAGAAGAGTTGGAGAATGGAAGTGGAGGAGAAGCTGAAGAGGCTGCAATCTCTTCTCTTCGGCGCCGAGCGCGCTCTCCAGAACGAAGACTTCTCCTCCGCTTACGTCCTCACGCTTCGCCTCCTCGGCTTCCTCGACGCGCACTGCCACTCCCACGTCGACCAAGCCTTCATCCACCCGATTCGCCGCCTCGCACTCGCCAAGCTCCACTCCGCTCACCGATCCCTCACTCCTCAATCTGATCGCCAAGCTTTTGAGCAAGCAAAGAAGTCTCCAGGATGCATTTTTGGCACAGCAGGAGATATTGACATTGAGAAGATTCGGAATTCGAAGTATTTTCGTGCTCTGGTCAAGGAATCTAAGGAAAGAGATGAGAATCGATTAGTAAGACATGTTGACAATCACACTGTTGATCTACCGGGGAAACAGGACAAAGCAGGCAGCAGAGCCTTGAAGCAAATGGTGCAAGCTAAGTTGCCATCTATGTATGGGATAAACAGCTCGAGGACTAGTAACAGTTCCACGAGTTCTTCGAACATAACAAGTAATAACTCTGAGGACTGCATGATTCTTGATAGGCCTCAATTTCATGCCAGCCGTACAAAGAGTCCTTGTGTCTCTTCTATCTTGCACGGTGAAGGAGAAGAAAGAGCTTTTGGAAACACATTTTCCACAAAACGTGTATACATGGAAAACAATAGCCCCAGAGTTGGATATGTGAAGTCACCGTCAAGTAAGGAGGAAGTTAATCCTGGTTTTTGTGGCAACGGGTTTGTTACTGCTAGAGCAAAACTGGAAATGGAAGCAAAGAAGCGAGGAGTAGGTGGTTCACCCAGTGCCTCTGTCTCACCACAATGTGATAACAATCCTACCAACAGGTATCATGGTGGGAGATCATATGGTGTTTCACGACGTGGCCTCCGTGGTAGTTTTGTTCCCCCTATTAAATATAATGGGAACAATGGTGGATATATGAGCTCACGCATTGCTGGAAAATGTGATGATTCTTTAGATGACTCTACAAAGAAATGTCTGGAAATCTTGTGTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATTTGGAACCTCGCCTCATTGAACATGTTAGTAACGAGATTATGGATAGAGATCCCAATGTCCGGTGGGATGATATTGCTGGATTGGAGCATGCCAAGAGTTCTGTTAATGAGATGGTCATACTTCCTCTGCAACGTCCTGACTTATTTAAGGGCTGCCGTGCCCCTGGGAGGGGTCTGCTTCTGTTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCCAAGGCAACATTCTTTTACATATCTGCAAGTTCGTTGACCAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCCCTTTTTGGAGTTGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAAATAGATTCACTCCTTTCTCAGCGTAAGTCAGATGGTGAGCATGAATCAAGTAGACGGCTAAAGACGCAGTTTCTCATAGAAATGGAAGGCTTTGACACTGATAGCGAGCAAATTCTTCTTATAGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCAAGAAGGAGACTCACTAAAAGACTTTACATTCCCCTACCATCCTCAGATGCAAGAGCTTGGATTGTACGTAATCTTCTAGAAAAAGATGGATTATTCAATCTATCACAAAACGAAATGGATATCATATGCAACTTAACGGAAGGTTATTCAGGATCAGACATGAAAAACTTGGTGAAGGATGCTTCCATGGGTCCCCTAAGAGAGGCTTTAGGACAAGGCATAGAAATTGCAAAGTTGAAAAAGGAGGACATGCGGCCCGTAACTCTAAAGGACTTCGAGAATGCCCTCCAAGAAGTGAGGCCTTCTGTTTCCCCAAATGAACTTGGCATTTATGATCAATGGAACAAGCAATTCGGAAGCCTATCACTGTAG 2001 0.4578 MEEATEKSWRMEVEEKLKRLQSLLFGAERALQNEDFSSAYVLTLRLLGFLDAHCHSHVDQAFIHPIRRLALAKLHSAHRSLTPQSDRQAFEQAKKSPGCIFGTAGDIDIEKIRNSKYFRALVKESKERDENRLVRHVDNHTVDLPGKQDKAGSRALKQMVQAKLPSMYGINSSRTSNSSTSSSNITSNNSEDCMILDRPQFHASRTKSPCVSSILHGEGEERAFGNTFSTKRVYMENNSPRVGYVKSPSSKEEVNPGFCGNGFVTARAKLEMEAKKRGVGGSPSASVSPQCDNNPTNRYHGGRSYGVSRRGLRGSFVPPIKYNGNNGGYMSSRIAGKCDDSLDDSTKKCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKSSVNEMVILPLQRPDLFKGCRAPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDTDSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSDARAWIVRNLLEKDGLFNLSQNEMDIICNLTEGYSGSDMKNLVKDASMGPLREALGQGIEIAKLKKEDMRPVTLKDFENALQEVRPSVSPNELGIYDQWNKQFGSLSL 666
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01172 666 Gene3D - 384 658 IPR027417 -
Cca08g01172 666 Pfam ATPase family associated with various cellular activities (AAA) 425 555 IPR003959 GO:0005524|GO:0016887
Cca08g01172 666 Gene3D - 556 642 - -
Cca08g01172 666 PANTHER FIDGETIN-LIKE PROTEIN 1 70 663 - -
Cca08g01172 666 Pfam Vps4 C terminal oligomerisation domain 628 662 IPR015415 -
Cca08g01172 666 ProSitePatterns AAA-protein family signature. 527 546 IPR003960 GO:0005524|GO:0016887
Cca08g01172 666 CDD AAA 418 555 - -
Cca08g01172 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 661 IPR027417 -
Cca08g01172 666 MobiDBLite consensus disorder prediction 278 305 - -
Cca08g01172 666 SMART AAA_5 421 557 IPR003593 -
Cca08g01172 666 Coils Coil 10 30 - -
Cca08g01172 666 PANTHER AAA DOMAIN-CONTAINING 70 663 - -
Cca08g01172 666 MobiDBLite consensus disorder prediction 283 301 - -
Cca08g01172 666 MobiDBLite consensus disorder prediction 169 190 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca08g01172 Cca-Chr8 33608672 33615882 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01172 340 664 Calmodulin-binding Proteins AT3G56690 30.746 2.81e-40 156
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01172 K22766 - gmx:100776024 1086.25