Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01138 ATGGGAACCAGAAAGGAAGAAGAGAAGAACGAGAAAATTATCAGGGGTCTCATGAAGCTTCCGCCGAATCGAAGGTGTATCAACTGCAATAGCTTGGGACCACAATATGTATGTACAAATTTTTGGACTTTCATTTGCATGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTGTCAATGGCGAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGTGGTAACCAGCGTGCAAGGGAAATACATTTGAAAAATTGGGATTTCCAAAGGCAGCGGTTGCCAGATAACAGCAATGTTGATAAAATAAGGGAATTTATAAAGAGTGTATACGTTGATGGAAGATATGCTGGAGTGAAGTCTTCAGAAAAGCCTCCAAGAGATGCACAGAGCCCTGGAATTCATGAAGATGAGATTAGGCGTGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAATATGAAGATCGACGGTATGGAAAACAGGCAGCTTCACTGACCAGAAAGCCTGGTTCAGATAAAGTTCGCTATGAAGGGAAGATTTCTAATGTTATCTACAGTCCTGGCCGCCTCAGTGATCATGCATATGATGACAGATTTGCAAATGAGGGATCTGGTCCAAGAATTTCTGACTTTTCTGTGTCTAGTGGTCGAGAACAATTCAAATCTGATGTTCAATCTCCCAATTTTCATAAGGATGTCAAGATTAGCAGTCCATCCTATCAGTGGCGATCTGGTTCCAGTTCAAGTGAAGATTTGTGGTCCCAAACAAGAAATGCATCTCTGGAAACTAATGTCAATGCCAAAAAAGATTCAGATGGAATTCATCCTCTGCAGAGAACTGCATCAGCACAATCGACAGACAACAAATTTTCATCCTTGAGATCTTATAATTCTGGTAGTTTAGTTGATTTTTTCTCAGAAGCAGTCCAAGCTTCAGAACCACTTCAGAACAAAGCATTTGGCATTCCACGACCACCTGGTTCTACAAGATCTGCTAGCATGGACCTCTCCAAGGCACCACTGGGTTCAGCTTCATCCATTGATCTTTTTCAGTTACCAGCAGCACCATCTCAAGCTCCAACAGTGGATCTGTTTCAGTCATCTGTTTCATCTGCAGCTCCATCTTTCAATGAGAATCAACTTGCTGAAACATCCGAACTTGCATCTGTTGACTTTTTTGGGAATCTTACTCAGCTGCCTGCTACTGTATCCTCAGATGAGAAGTCACCGGAGTTATCTGTCCCTAAAAATGAAGGATGGGCAACTTTTGATATGCCTCAGAGCACCTCATCTGCCCAAGTGGAAATTCCAGCCACTGTACCCTCAAGTGCTAAATCTTTACAAGAAATATTTGATCCATTTTCAACCTCAAATGCAAACATGCAATGGCCGTCTTTTGAAATATCTAGTGTCAGTGTACCTTCTTCAGTGACATCTAATTTATGGCATGATGGTGTGTGGAATGGAGAAGAACAAGTTTCTGTCGTGGAAGCAAACACACAAGTACAAGAAAGTTTGCCATGGAATGCATTTGAGGATTCTGGTGGCCGTCATCATGTTGATGCCCTTGGTCAAGGATTACAATTGCACAATTTTCCATCAACTAATAATCAAATTTTAGGTTTAAGAGAATCTGAGGGACTCAATAAGGATGGAGTTCAAGGCATTGCCCCTATTGATGCATTTGATAATCATGACATAACATCACATGGAGATATTCAACTTAATGGAGTGAAATGTAAATCGACTAATCCATTTGATTATCCCTATGAATCTGATGTAGATCACAACAATATGTTTCTTGATATGAGCTCTTTGCAAGCTGCACTGCCAGATGCCCTGTTTCCAGCCAACTTCCATGGTGGTATAGCTGAATCTTGGCTTCCTCAAAACACGGTGACCCCATATATTTCCTCTACTGGAGAAGGTGGTTTATCATTCATGGCTGCTCAATCACCAAGTCCTCAAATACAGAACATCCAGACACCGGAACCAGTTGCTTCAGTTGGGGGAAATCCTTTTGCATAG 2058 0.4135 MGTRKEEEKNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRAREIHLKNWDFQRQRLPDNSNVDKIREFIKSVYVDGRYAGVKSSEKPPRDAQSPGIHEDEIRRASSYHSYSQSPPYDYQYEDRRYGKQAASLTRKPGSDKVRYEGKISNVIYSPGRLSDHAYDDRFANEGSGPRISDFSVSSGREQFKSDVQSPNFHKDVKISSPSYQWRSGSSSSEDLWSQTRNASLETNVNAKKDSDGIHPLQRTASAQSTDNKFSSLRSYNSGSLVDFFSEAVQASEPLQNKAFGIPRPPGSTRSASMDLSKAPLGSASSIDLFQLPAAPSQAPTVDLFQSSVSSAAPSFNENQLAETSELASVDFFGNLTQLPATVSSDEKSPELSVPKNEGWATFDMPQSTSSAQVEIPATVPSSAKSLQEIFDPFSTSNANMQWPSFEISSVSVPSSVTSNLWHDGVWNGEEQVSVVEANTQVQESLPWNAFEDSGGRHHVDALGQGLQLHNFPSTNNQILGLRESEGLNKDGVQGIAPIDAFDNHDITSHGDIQLNGVKCKSTNPFDYPYESDVDHNNMFLDMSSLQAALPDALFPANFHGGIAESWLPQNTVTPYISSTGEGGLSFMAAQSPSPQIQNIQTPEPVASVGGNPFA 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01138 685 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Cca08g01138 685 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Cca08g01138 685 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Cca08g01138 685 MobiDBLite consensus disorder prediction 123 161 - -
Cca08g01138 685 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Cca08g01138 685 MobiDBLite consensus disorder prediction 326 347 - -
Cca08g01138 685 MobiDBLite consensus disorder prediction 275 299 - -
Cca08g01138 685 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Cca08g01138 685 MobiDBLite consensus disorder prediction 666 685 - -
Cca08g01138 685 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 685 - -
Cca08g01138 685 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Cca08g01138 685 PANTHER ARFGAP/RECO-RELATED 1 685 IPR044820 GO:0005096
Cca08g01138 685 MobiDBLite consensus disorder prediction 134 148 - -
Cca08g01138 685 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Cca08g01138 685 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Cca08g01138 685 CDD ArfGap_AGFG 11 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01138 Cca-Chr8 31914455 31923927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01138 14 116 C2H2 Transcription Factor Family AT4G05330 33.333 2.38e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01138 K15044 - gmx:100788316 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01138 08 31914455 31923927 Cca08g01138 08 31914455 31923927 ECH