Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01133 ATGGCACCGAAGATGAAGCTGCAGCCGCGCAATCCCCCTGTTGAGGATCCACCCACAGCTTCTTCCTCTTCCTCTTCCgaatacgaagaagaagaagaagaCTTGCAACCTTCCACCCAACCACCCGCGCAAGATTTTTCCTCTTCCTCATCCGAAGACGACGAAGAACCTTCCAAAACCCCTCCCACTAACCCTACCTCCAAACCctcctcctccgaatccgacaccccctccgactccgattccgagcccaagcccaagcccaccaatcaggcccaaaagcccaagccccagccccagtccTCCTCCGCCCCGCCCAAATCCGGATCCAAGCGCCCCGCCGAGTATTCCGCCCTGCCCAAGCCCGCCAAGAAGAAGCCAACCGACGCCTCTCCTTCCGTCGCCGCCTCCGACGACGAGGCGGAGGAGGACGGGAAGAAGTCCGGCGGTGGCGGGGGCGGGCAATTAAAGCTGTTCCAGAGGCTCTGGAGCGAGGAAGACGAACTGGCGATTCTGAAGGGCATGGCCGAGTTCATTTCCCGCACCGGGCAAGACCCTCACAGGTACCCCGAGTCTTTCCACGACACCGTTAAGAAGTCGCTCCACGTGGAAGCCTCCAGCAACCAGCTGAAAGAGAAGATCCGGCGCTTGAAAAAGAAATTCGAGACCAATTTGGGGCGAGGGAAGAACGGGGAGGACCCCAAATTCTCCAAGCCCCACGACCAGACGCTGTTCGACTTGTCCAAAAAGGTTTGGGGCGAAGCTAGTATGCTCGTGGTGAGGCCCAAGTTCAATGGGAAGCCCGCCAAGAGCCCAATTCCCAAGAAGGAAGGTAAAAGCAGGAATGTGACAACAACAACGCCCGAAACAAACACTCAATTGGCGCTTGTGGACTCGAAGGGGTCTGAAAAATCTGATATTGGTGATGTGAATTCGCTTTACCGCGAGATATCTGATGTTAAGGAGCTGGATGAGGATGAGATGAAGAGGGGATTGACATTGATTGGAGAATCGAAGAGGAAGGAGTTGGAGGGAAGGTGGAGGAACTTGCGACGTGCTGAGATTGAACTCGTTGCGAATCGCTCTTTGCTCATTGGGGAACAGATTAAGTTGATACATGAAGCGCTTGAGTCATCTGACAAATAG 1146 0.4904 MAPKMKLQPRNPPVEDPPTASSSSSSEYEEEEEDLQPSTQPPAQDFSSSSSEDDEEPSKTPPTNPTSKPSSSESDTPSDSDSEPKPKPTNQAQKPKPQPQSSSAPPKSGSKRPAEYSALPKPAKKKPTDASPSVAASDDEAEEDGKKSGGGGGGQLKLFQRLWSEEDELAILKGMAEFISRTGQDPHRYPESFHDTVKKSLHVEASSNQLKEKIRRLKKKFETNLGRGKNGEDPKFSKPHDQTLFDLSKKVWGEASMLVVRPKFNGKPAKSPIPKKEGKSRNVTTTTPETNTQLALVDSKGSEKSDIGDVNSLYREISDVKELDEDEMKRGLTLIGESKRKELEGRWRNLRRAEIELVANRSLLIGEQIKLIHEALESSDK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01133 381 PRINTS Proline rich extensin signature 10 26 - -
Cca08g01133 381 PRINTS Proline rich extensin signature 30 42 - -
Cca08g01133 381 PRINTS Proline rich extensin signature 57 78 - -
Cca08g01133 381 PRINTS Proline rich extensin signature 84 100 - -
Cca08g01133 381 PRINTS Proline rich extensin signature 110 127 - -
Cca08g01133 381 PANTHER BNAANNG10740D PROTEIN-RELATED 15 379 IPR007592 GO:0006355
Cca08g01133 381 MobiDBLite consensus disorder prediction 1 156 - -
Cca08g01133 381 MobiDBLite consensus disorder prediction 278 293 - -
Cca08g01133 381 PANTHER STOREKEEPER PROTEIN 15 379 - -
Cca08g01133 381 MobiDBLite consensus disorder prediction 65 108 - -
Cca08g01133 381 MobiDBLite consensus disorder prediction 221 241 - -
Cca08g01133 381 MobiDBLite consensus disorder prediction 263 293 - -
Cca08g01133 381 Pfam Protein of unknown function, DUF573 159 253 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01133 Cca-Chr8 31538277 31540053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01133 13 375 GeBP Transcription Factor Family AT1G61730 32.732 1.52e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Cca08g01133 DUF573 2.5e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01133 - - gmx:100782985 296.204