Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01131 ATGAGTAACTCACTAAACTTGAATAATGGTGGTTTTGGGTTCTGTGCTGACATGAATATTTTCCCTTCAGCTCCTGATCcttctgcttcttcttcttcttcttcGCTCCTTGGTCTCCAACCTTCTCTGGGTTCAAACACTTTTGGGGTGATGACTCATGCTACTGCAGGCACAGAATCTGAAAGTTCTGATGCACCCTTTCAGTTTCAGATTTTGAACTCTTCAGTTTTTCAACCCCAGGAGGAGGATGAAGAGAGCTTTGGGATTGAAAACATGAGCTTGTCTGTGAAACCTGGTGAGGAAGTTGATGCCGGTAACTCTTCTGGCTCAGGGAAAAATAAGCAAACTAAGCTTTGTGCTAGAGGACACTGGAGGCCAGCTGAAGATGCAAAACTCAAAGAGCTTGTTGCTCAATTTGGACCTCAAAACTGGAACTCAATAGCTGAACATCTTCAAGGAAGATCAGGCAAGAGTTGTAGATTGAGGTGGTTTAACCAGCTAGATCCCAGGATTAACCGAAAGGCTTTCACTGAGGCAGAAGAGGAGAGGCTCTTGGCTGCACACAAGGTGTACGGTAACAAATGGGCCATGATTTCTAGGCTCTTTCCTGGGAGAACCGATAATGCAGTGAAGAATCATTGGCATGTGATCATGGCTAGGATGCAAAGGGAGAAATCATGTGTTTACAGAAGGAGAAAGCCCTCAGTTCAGACCCTCTCAAAGGACATGACCTTGCCAAATAATGCAGCAAGTGAATCAACCATCTCAAGCACCATCATTGATGAATCTGCCTCAACAGCCACCGACCTCTCCCTTACTCCCTCCTCAGCCACACCCACAACCCCAATGATGCCTTCTCACAACCCTGGTCCTGTTCACAATCACCAAGCCTTTGGTGAACTCATGGGTGTATCTGGAGAAAGCATGACCCCAACCAGGGATGTGGGTTTTGGCAAGTTTTTTAGTGCTTGGAAAGGTTCATGTAACGCTGGACACATGGGAAAGCTCAAGGGTGTGGTGGACCAATCCCATTATTCAGATTCAAACTCATCAGAGGTTTCAGTATCTGAGTCAGTTGCCACCAACAGAGCTACCAATCTATCAATTTCTGGGGAAAGTGAAAACGTGGGTGATAACAAGGCCAACATGCCATTCATTGACTTTCTTGGAGTTGGAGCTACATAA 1185 0.4489 MSNSLNLNNGGFGFCADMNIFPSAPDPSASSSSSSLLGLQPSLGSNTFGVMTHATAGTESESSDAPFQFQILNSSVFQPQEEDEESFGIENMSLSVKPGEEVDAGNSSGSGKNKQTKLCARGHWRPAEDAKLKELVAQFGPQNWNSIAEHLQGRSGKSCRLRWFNQLDPRINRKAFTEAEEERLLAAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARMQREKSCVYRRRKPSVQTLSKDMTLPNNAASESTISSTIIDESASTATDLSLTPSSATPTTPMMPSHNPGPVHNHQAFGELMGVSGESMTPTRDVGFGKFFSAWKGSCNAGHMGKLKGVVDQSHYSDSNSSEVSVSESVATNRATNLSISGESENVGDNKANMPFIDFLGVGAT 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01131 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 172 222 IPR017930 -
Cca08g01131 394 Gene3D - 174 244 - -
Cca08g01131 394 SUPERFAMILY Homeodomain-like 121 214 IPR009057 -
Cca08g01131 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 171 IPR017930 -
Cca08g01131 394 PANTHER OS08G0435700 PROTEIN 62 394 - -
Cca08g01131 394 CDD SANT 124 165 IPR001005 -
Cca08g01131 394 PANTHER MYB PROTEIN-RELATED 62 394 - -
Cca08g01131 394 Gene3D - 121 172 - -
Cca08g01131 394 SMART sant 120 169 IPR001005 -
Cca08g01131 394 SMART sant 172 220 IPR001005 -
Cca08g01131 394 CDD SANT 175 215 IPR001005 -
Cca08g01131 394 ProSiteProfiles Myb-like domain profile. 168 218 IPR001005 -
Cca08g01131 394 ProSiteProfiles Myb-like domain profile. 121 167 IPR001005 -
Cca08g01131 394 Pfam Myb-like DNA-binding domain 173 216 IPR001005 -
Cca08g01131 394 Pfam Myb-like DNA-binding domain 121 167 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01131 Cca-Chr8 31157589 31159816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01131 116 277 MYB Transcription Factor Family AT5G17800 62.941 3.90e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca08g01131 Myb_DNA-binding 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01131 K09422 - gmx:100791795 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01131 08 31157589 31159816 Cca08g01131 08 31157589 31159816 ECH