Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01122 ATGACAGTTTGTGTGTCTAAAAGCATGAGATACACCTTGTTCATCAACACCTCTTTCCTCCTCGTGATTTGTTCTTTTATGATTGTTCATTTACACACCCCAGAAGTTGTGGTTGTGACCAAAATCGCTGCCTCTGATATCAGCAATGAGCAAGAGTGTGAGAGCTTAGACAACCTCGGTGACTACAGAGCCAAGTGCTTGTACCTGAAATCCAATGACCCTTGTGCTTCTCAGGGCTACATTGATTATCTCTACCTTTTCTATTGCAAATTTGGGAGATTCCCTTCTCTGGGTTACACCCTTTTGTTTCTTTGGCTCCTAGTTCTGTTTTACTTGTTGGCTAACACAACTTCTGAGTACTTTTGTCCCTCCCTTGAAAGCCTCTCAAAGTTACTAAGGTTGTCCCCTACTATTGCTGGAGTTACTCTCCTCTCTCTTGGAAATGGTGCATGTGATGTTTTCTCTAGCCTTGTGTCTTTCCAGGGAAGTGGGACCCGAAGCATTGGCTTCAACACGGTTCTTGGGGGCGTTTCCTTTGTGTCATGTGTTGTGGTGGGGAGTGTGAGCATTGCAACACGCCAAAGGGGTGTTCAAGTAGTCAAGTCTGCGTTTGTGAGAGATGTTTATTTTCTCCTGTTGGTTCTTCTGACCTTGTTTGGTATTTTGGTCTATGGTAGGATCAATGTTCTTGGGGCAATTGGTTTCACTTTGATGTATGCTGTGTATGTGGTTATTGTTTATGTCTCTTCTAGATGGAAGGAAGGTGGTGGTGGTGCTGATGCTGAAATTGGCAATGATTTGAGTTTGAGTGTGCCTCTTCTCAAGAAAGGACCAATTGATTGTGTTGAAAATGGTGCTCAAGATATTGAGAAACATTTCTGTTGTATGAGATATTCCATGTGTAGAGTGTCACTTTTTGTTCTTGAGATGCCCCTTTACTTGCCTAGGAGATTGACAATTCCTATTGTGTGTGAAGAGAGATGGTCAAAGGTGTATGCAGTTTCTTCAGTGATATTATCTCCACTTCTCTTGTCTTTCCTGTGGAGAAGTCCTTATAATGGAAACAGTGACTTCAGCCAAAACCTTATTGTGTATGAAATTGGACTGTTGGTTGGAATCATATTTGGTGTGGCTGCATTTTTCACAACCAAAATGTCAGGGCCACCAAACAAGTGCTTATTTCCTTGGCTTGCAGGTGGGTTTGTGATGAGTGTGACATGGAGCTACATTATAGCACAAGAGTTGGTGGGGTTGCTGGTTTCAATAGGGTACATATGTAGAATAAGTCCTTCAATGCTAGGGTTAACAGTTCTTGCTTGGGGGAACTCAATTGGTGATTTAATGACAAATTTAACAATGGCTTTAAATGGTGGACAAGAGGGTGTTCAAGTAGCAATATCAGGTTGCTATGCCGGTCCTATCTTCAATACCCTCATTGGTTTAGGCTTGTCTCTTGTGACTTCTACTTGGTCAGAGTACCCTGAACCTGTTGTGATCCCTAAGGATCCTTATCTGTGGGAAACAATGGTGTTTTTGGTGGCTGGATCCTTATTATGTATAATTTTATGCTAG 1572 0.4218 MTVCVSKSMRYTLFINTSFLLVICSFMIVHLHTPEVVVVTKIAASDISNEQECESLDNLGDYRAKCLYLKSNDPCASQGYIDYLYLFYCKFGRFPSLGYTLLFLWLLVLFYLLANTTSEYFCPSLESLSKLLRLSPTIAGVTLLSLGNGACDVFSSLVSFQGSGTRSIGFNTVLGGVSFVSCVVVGSVSIATRQRGVQVVKSAFVRDVYFLLLVLLTLFGILVYGRINVLGAIGFTLMYAVYVVIVYVSSRWKEGGGGADAEIGNDLSLSVPLLKKGPIDCVENGAQDIEKHFCCMRYSMCRVSLFVLEMPLYLPRRLTIPIVCEERWSKVYAVSSVILSPLLLSFLWRSPYNGNSDFSQNLIVYEIGLLVGIIFGVAAFFTTKMSGPPNKCLFPWLAGGFVMSVTWSYIIAQELVGLLVSIGYICRISPSMLGLTVLAWGNSIGDLMTNLTMALNGGQEGVQVAISGCYAGPIFNTLIGLGLSLVTSTWSEYPEPVVIPKDPYLWETMVFLVAGSLLCIILC 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01122 523 PANTHER CATION CALCIUM EXCHANGER 2 521 - -
Cca08g01122 523 Gene3D - 331 523 IPR044880 -
Cca08g01122 523 Gene3D - 134 273 IPR044880 -
Cca08g01122 523 Pfam Sodium/calcium exchanger protein 103 247 IPR004837 GO:0016021|GO:0055085
Cca08g01122 523 Pfam Sodium/calcium exchanger protein 397 521 IPR004837 GO:0016021|GO:0055085
Cca08g01122 523 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 2 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01122 Cca-Chr8 30658823 30661114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01122 14 515 Antiporters AT5G17850 53.565 6.43e-153 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01122 K13754 - gmx:100813848 806.208