Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01121 ATGGAAGATCACCAGGGGCAACAGCAGCAACAGCAACAGGAGCCAAATAGTCCAAATAACCAACAAGGATCCGAGAGAAGTGAACCCGTGAGGTCAAGATGGACTCCAAAGCCAGAACAAATCCTCATACTTGAGTCCATCTTCAACAGTGGCATGGTTAACCCCCCAAAAGATGAAACAGTCAGAATAAGAAAGCTCCTTGAGAAATTTGGCACCGTTGGTGATGCCAACGTCTTCTATTGGTTCCAAAACCGCCGCTCCCGCTCTCGCCGCCGCCAACGCCAGATTCAGGCCTCCCTAAATCAAGTTGGCGGTGCAAGtagtaataataataataacaatCTATATCAGCATCACCACCAAAACAACACTCCTCTTGTTGCGAACATGGGTTTTGGTGGTGGTGCTAACTCCTCTCTCCCTAACTCTTCCTATATTTCTGGCTCCTCTTCTTCTTCATTCGGTGGTAGTAGCCAAGAAAGCTTAAGTGAGTTCTTTTCACCCTCTACTCAAATGGGTTTTCCTGGAATTGATCACCATGCTTCATCTGTATCATCTTCAGTTCTGTATCCCCCAGAAGCTTCAAATTTGAACTATCACTCTGGATTTGGAGGGATTCCTTCAGGATTCATCACGGTGTTTATCAATGGGGTTGCAACAGAAGTTCCAAGGGGCCCAATTGACATCAAAGCAACGTTTGGTGAAGATGTAATGTTAGTTCATTCCTCCGGAGTGTCAGTTCCGACCAATGAGTTTGGTTTCTTGATGCAGGGCTTGCAGCATGGTGAAAGCTACTTTCTGGTTTCAAAGCAAACACAAGTGTGA 825 0.4521 MEDHQGQQQQQQQEPNSPNNQQGSERSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQIQASLNQVGGASSNNNNNNLYQHHHQNNTPLVANMGFGGGANSSLPNSSYISGSSSSSFGGSSQESLSEFFSPSTQMGFPGIDHHASSVSSSVLYPPEASNLNYHSGFGGIPSGFITVFINGVATEVPRGPIDIKATFGEDVMLVHSSGVSVPTNEFGFLMQGLQHGESYFLVSKQTQV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01121 274 SUPERFAMILY Homeodomain-like 25 98 IPR009057 -
Cca08g01121 274 MobiDBLite consensus disorder prediction 94 111 - -
Cca08g01121 274 MobiDBLite consensus disorder prediction 1 36 - -
Cca08g01121 274 MobiDBLite consensus disorder prediction 90 111 - -
Cca08g01121 274 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 271 IPR044558 GO:0003700|GO:0048830
Cca08g01121 274 SMART HOX_1 29 96 IPR001356 GO:0003677
Cca08g01121 274 Gene3D - 31 98 - -
Cca08g01121 274 ProSiteProfiles 'Homeobox' domain profile. 27 92 IPR001356 GO:0003677
Cca08g01121 274 MobiDBLite consensus disorder prediction 1 29 - -
Cca08g01121 274 Pfam Homeodomain 31 91 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01121 Cca-Chr8 30625714 30628747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01121 11 274 Wox Gene Family AT3G03660 53.169 2.53e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca08g01121 Homeodomain 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01121 - - aprc:113866574 362.844