Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01114 ATGTTGTGGGTTGATAAGTATCGTCCCAAAACCCTCGACCAGGTTATGGTCCACGCCGACATCGCTCAAAATCTCAAGAAATTGGTAACGGAACAGGATTGCCCCCATTTGCTCTTCTATGGCCCATCTGGGTCTGGCAAGAAAACCCTAGTCATGGCCCTTCTCCGTCAAATGTTCGGACCCGGAGCCGAAAAGGTGAAGGTGGAGAACAGGACGTGGAAAGTGAATGCTGGGAGCAGATCAATTGATCTAGAGCTAACAACATTAGCAAGCGCCAATCACATTGAAATGAGTCCAAGTGATGCAGGATTTCAGGACAGATACGTTGTTCAGGAAGTAATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAGGGGAAGAAAGGGTTTAAAGTACTTGTGCTCAATGATGTTGACAAACTCTCTAGAGAAGCCCAACATTCTCTCCGCAGAACAATGGAGAAATACAGTGCTTATTGCAGATTAATACTGTGTTGCAATAGTTCTTCAAGAGTCACTGAAGCAATCCGCTCTCGTTGTCTCAATGTTCGAATAAACGCACCACGAGAAGAGCAGATTGTTGAAGTTTTAGAATTCATTGGTAAAAAAGAAGGGCTGCAACTTCCTCCTGGTTTTGCTGCTCGTATCGCTGAAAAATCAAATAGGAATTTAAGGAGGGCAATTTTGTCATTTGAGACTTGTCGTGTCCAACAgtatcctttcactgtcaAACAAACAATTCCTCCAATGGACTGGGAAGAATATATTTCTGAAATTGCATCTGACATAATGAAGGAGCAGAGCCCAAAAAGGTTGTTTCAAGTTCGGGGAAAGCTTTATGAACTGCTAATCAATTGCATTCCTCCTGAGATCATTTTGAAGAGGCTCCTTTACGAGCTATTGAGGAAACTGGATGCAGAACTAAAGCACGAAGTTTGTCATTGGGCTGCATATTATGAACATAGGATGCGTCTTGGACAGAAGGCAATTTTTCACATTGAAGCATTTGTGGCCAAGTTCATGAGCATTTATAAATCCTTCCTCATCGCAACATTTGGCTGA 1065 0.4188 MLWVDKYRPKTLDQVMVHADIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALLRQMFGPGAEKVKVENRTWKVNAGSRSIDLELTTLASANHIEMSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPREEQIVEVLEFIGKKEGLQLPPGFAARIAEKSNRNLRRAILSFETCRVQQYPFTVKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKSFLIATFG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01114 354 Pfam DNA polymerase III, delta subunit 19 188 - -
Cca08g01114 354 Gene3D - 190 249 - -
Cca08g01114 354 Gene3D - 252 345 - -
Cca08g01114 354 SMART AAA_5 33 192 IPR003593 -
Cca08g01114 354 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 346 - -
Cca08g01114 354 Gene3D - 1 189 IPR027417 -
Cca08g01114 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
Cca08g01114 354 CDD AAA 35 189 - -
Cca08g01114 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 240 IPR027417 -
Cca08g01114 354 CDD HLD_clamp_RFC 189 257 - -
Cca08g01114 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01114 Cca-Chr8 30098715 30103813 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01114 1 354 Core DNA Replication Machinery Family AT5G27740 83.898 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01114 K10756 - gmx:100818329 675.626