Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01113 ATGGGAGTAGGCAAGGGGTCCTATGGAGCTGTTTACAAAGCAAGGGATTTGAGAACCTCGGAGATGGTTGCTATTAAAGTAATACCGTTATCTGAAGGGGAGGAGGGGTATGAGGAAATCCGTGGTGAGATTGAAATGTTACAACAATGTAATCATCCAAATGTTGTCGGTTATCTTGGAAGCTATCAAGGAGAAGAGTATCTTTGGATGGCCAAGCTAAAGAGAGAAGAAAAATTGCAGCAACAAGAGGAAGATAGGCAATCCTCCTTTGGTTTTGCTCAGACCTTGGAGTTCTTCCTTGAACCAAATTCTGGACGTTTAAATCCAAAAAAAAAAGGAGAAGAGAAACAGAATTGA 357 0.4118 MGVGKGSYGAVYKARDLRTSEMVAIKVIPLSEGEEGYEEIRGEIEMLQQCNHPNVVGYLGSYQGEEYLWMAKLKREEKLQQQEEDRQSSFGFAQTLEFFLEPNSGRLNPKKKGEEKQN 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01113 118 SUPERFAMILY Protein kinase-like (PK-like) 3 70 IPR011009 -
Cca08g01113 118 Pfam Protein kinase domain 3 71 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01113 118 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 3 71 - -
Cca08g01113 118 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 3 71 - -
Cca08g01113 118 ProSitePatterns Protein kinases ATP-binding region signature. 3 26 IPR017441 GO:0005524
Cca08g01113 118 Gene3D Phosphorylase Kinase; domain 1 1 72 - -
Cca08g01113 118 ProSiteProfiles Protein kinase domain profile. 1 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01113 Cca-Chr8 30061123 30065269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01113 5 71 MAP Kinase Kinase Kinase Kinase AT1G69220 85.075 3.67e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Pl Cca08g01113 Pkinase 1.2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01113 - - ccaj:109818042 149.443