Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01112 ATGGAACCTTTCATCTACAACACCAAACCTCGCCCCAAAAAACTCATTCTCCTCCTCAACATAGCCTTCATTTTCCTCATTTTTCTCTTCCTCAAAGCCTATCTCCACCCTTCTCATTCCAATGTTCATGCCTCCACAAAAGCCTTCAACCATGCTAGAATGCTCAGTGACATCAGTGTTGATGGCTGCAGTGACCTTCACAAGTACTCAGATTATGACTCCAAGTGCTTGTATGTCAAATCTCATGTTCAGTGCAGGTCAAAAGGGTACATAAATTATCTCCAAATTTTCTATTGCAGCTTTGGCCATTCCCCAATTCTTGGTCATGCACTGCTTGTGCTGTGGCTTGTGGTGTTATTCTATCTTTTGGCTGACACAGCTTCAAACTACTTTTGCGCTAACCTAGAAGGTTTGTCTGATATCCTAAGACTATCCCCCACCATTGCTGGGGTAACCTTGCTTTCTCTAGGAAATGGTGCTCCTGATTTCTTTGCTAGTGTTGTTTCCTTCACAAGATCCAATGATGGTGCAGTTGGCCTCAACAGCATTCTGGGAGGGGCATTTTTTGTCTCTAGTGCTGTTTTGGGGATCATAAGTTTCCTTGTTGGTTCAAATGAAATTGCAATTGACAAGGCTAGTTTCATTAGAGATGTCATTTTCTTTCTTTTCTCTCTTTTCATTCTCCTTGTAATCATTTCCATTGGTAAAATCACCTTGTTGGGGTCAATCTTTTATGTCTCTATTTACTTCCTCTATGTATGTGCCGTCTCTGCCACACATTTCATCTATGGAGGGGATAGGGTTGAAGCAGAAATTGCCTCATCTTCTGATGACTTGGCAGAGTCTGGCATACCCTTGCTAGGCTGTGTTGATGATGAGAAAGAGAAACCAAATAAGGAGGTTATTGAAGAGAAGCAAGAGGGTTTTGGAATTGGAAATGATTCATTTGACTTTACTTACTTGAGCAAGTTTGTGAAAGTGCTGGAGTTACCTCTTTGCTTGCCAAGAAGGCTTACTATACCAGTTGTGAGTGAGGAGAGTTGGTCAAAGCCATATGCTGTTATATCTGTGACATTGGCACCAGTGTTGTTTGCAGCACTTTGCAACACCCAAATGGAAAATTCTAGTTCAAGGAGTGGTCTTGTTGCATACTTAACAGCTGCTTTGCATTTTCCTCCCGTCGGGCTCCCTCGCCAAGAGTATGCTCACAGGAAGTGTGTCCAGCACTGGTGTGATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAACCCGGCGTTGTAGGAACTAATTTTGAAGCTCTAGGTTCTGAAATTGGTGTCAAGTGTGCTGTGGAAATCAGTATTGACTAA 1362 0.4244 MEPFIYNTKPRPKKLILLLNIAFIFLIFLFLKAYLHPSHSNVHASTKAFNHARMLSDISVDGCSDLHKYSDYDSKCLYVKSHVQCRSKGYINYLQIFYCSFGHSPILGHALLVLWLVVLFYLLADTASNYFCANLEGLSDILRLSPTIAGVTLLSLGNGAPDFFASVVSFTRSNDGAVGLNSILGGAFFVSSAVLGIISFLVGSNEIAIDKASFIRDVIFFLFSLFILLVIISIGKITLLGSIFYVSIYFLYVCAVSATHFIYGGDRVEAEIASSSDDLAESGIPLLGCVDDEKEKPNKEVIEEKQEGFGIGNDSFDFTYLSKFVKVLELPLCLPRRLTIPVVSEESWSKPYAVISVTLAPVLFAALCNTQMENSSSRSGLVAYLTAALHFPPVGLPRQEYAHRKCVQHWCDEKGDITCEICHQPYQPGVVGTNFEALGSEIGVKCAVEISID 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01112 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 428 IPR013083 -
Cca08g01112 453 PANTHER CATION/CALCIUM EXCHANGER 1 7 389 - -
Cca08g01112 453 Gene3D - 144 276 IPR044880 -
Cca08g01112 453 SMART ringv_2 390 423 IPR011016 GO:0008270
Cca08g01112 453 SUPERFAMILY RING/U-box 399 427 - -
Cca08g01112 453 Pfam Sodium/calcium exchanger protein 113 255 IPR004837 GO:0016021|GO:0055085
Cca08g01112 453 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 7 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01112 Cca-Chr8 30014064 30034598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01112 61 393 Antiporters AT5G17860 47.278 6.96e-89 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01112 K13754 - gmx:100818583 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01112 08 30014064 30034598 Cca08g01112 08 30014064 30034598 ECH