Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01109 ATGGGAGTCCAAAATGTGCTTTCTAGGTTTAGGCGAGTGTCTGAATTTGAACAAAACAAGAAAATGTTGAGTCAAGAGAGCTTTTTAAGTCAAAGGATCATTAAAGCCCAAGCCCAGATGAAGAAACTGAGTAATGAAATTAGGAAGAAAGAAATAACCCTTCTCATGCTTCAATACCTCAATGCTGGGAACATTTTTGACAATGCCAACATGATTGATCTAAATGATATCTCACGCTTGATTGATAAAAACATGGGGGAAATAGAAAGGAAAAACAGTATTAGTCAAGTCCAAGAGATGACCCAAAATGTTGAAAATGGAAGAATAACCATGACTTAA 339 0.3569 MGVQNVLSRFRRVSEFEQNKKMLSQESFLSQRIIKAQAQMKKLSNEIRKKEITLLMLQYLNAGNIFDNANMIDLNDISRLIDKNMGEIERKNSISQVQEMTQNVENGRITMT 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01109 112 PANTHER MADS BOX PROTEIN 2 103 - -
Cca08g01109 112 Coils Coil 26 53 - -
Cca08g01109 112 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01109 Cca-Chr8 29787464 29787802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01109 2 91 Type I MADS-box Gene Family AT5G48670 37.778 4.67e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01109 - - ccaj:109792331 172.555