LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g01105	ATGGAGGGTTTACACGGGAGTTCTAAAGTGAGAGGACTGAACTTAGGAGGGTGGCTGGTTATTAAAGGTTGGATCAAGCCTTCACTGTTTGATGGCATTGCCAATGGAGACATGCTAAAAGCACCTATCGATCCTTTCACTAGAGAAAGTTACAAGCCATCTGCATCTCAAGGAGTTCCAATTGGAGGGATGAGGAGTGGCAGCATATCAAGAGGATTTAGGGGTGAGTTCCGACAATGGCAAATTATTCCTAGCTCATGTGAAGCATCACCAGTCATGGCCATTCAATTCTCTTTTATTGCTGCTTGCAAGAAACCTCCTGTGTTTTGCATAATTACTAAATATTTGGCTGGTGGTTCACTAGCAAAATTCCTGCATCACCAACAACCAGATATACTTCCACTCAAACTTGTTCTGAAATTAGCCCTTGACATTGCAAGGGGAATGCAATATCTTAATTCTCAAGGGATTCTCTATAGGGACCTCAAATCAAAGAATCTCCTTCTGGGGGAAGACATGTGTGTAAAAAAAGCACCTATCGATCCTTTCACTAGAGAAAGTTACAAGCCATCTGCATCTCAAGGAGTTCCAATTGGAGGGATGAGGAGTGGCAGCATATCAAGAGGATTTAGGGGTGAGTTCCGACAATGGCAAATTATTCCTAGCTCATGTGAAGCATCACCAGTCATGGCCATTCAATTCTCTTTTATTGCTGCTTGCAAGAAACCTCCTGTGTTTTGCATAATTACTAAATATTTGGCTGGTGGTTCACTAGCAAAATTCCTGCATCACCAACAACCAGATATACTTCCACTCAAACTTGTTCTGAAATTAGCCCTTGACATTGCAAGGGGAATGCAATATCTTAATTCTCAAGGGATTCTCTATAGGGACCTCAAATCAAAGAATCTCCTTCTGGGGGAAGACATGTGTGTAAAAGTAGTAGATTTGTATAGTTCATAA	963	0.4154	MEGLHGSSKVRGLNLGGWLVIKGWIKPSLFDGIANGDMLKAPIDPFTRESYKPSASQGVPIGGMRSGSISRGFRGEFRQWQIIPSSCEASPVMAIQFSFIAACKKPPVFCIITKYLAGGSLAKFLHHQQPDILPLKLVLKLALDIARGMQYLNSQGILYRDLKSKNLLLGEDMCVKKAPIDPFTRESYKPSASQGVPIGGMRSGSISRGFRGEFRQWQIIPSSCEASPVMAIQFSFIAACKKPPVFCIITKYLAGGSLAKFLHHQQPDILPLKLVLKLALDIARGMQYLNSQGILYRDLKSKNLLLGEDMCVKVVDLYSS	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g01105	320	Gene3D	Transferase(Phosphotransferase) domain 1	232	320	-	-
	Cca08g01105	320	SMART	tyrkin_6	13	253	IPR020635	GO:0004713\|GO:0006468
	Cca08g01105	320	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	294	306	IPR008271	GO:0004672\|GO:0006468
	Cca08g01105	320	ProSiteProfiles	Protein kinase domain profile.	110	320	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca08g01105	320	SUPERFAMILY	(Trans)glycosidases	7	43	IPR017853	-
	Cca08g01105	320	PANTHER	SERINE-THREONINE PROTEIN KINASE	235	317	-	-
	Cca08g01105	320	Gene3D	Transferase(Phosphotransferase) domain 1	97	180	-	-
	Cca08g01105	320	PANTHER	SERINE/THREONINE-KINASE HT1-LIKE PROTEIN	235	317	-	-
	Cca08g01105	320	PANTHER	SERINE/THREONINE-KINASE HT1-LIKE PROTEIN	98	192	-	-
	Cca08g01105	320	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	157	169	IPR008271	GO:0004672\|GO:0006468
	Cca08g01105	320	Gene3D	Glycosidases	4	52	-	-
	Cca08g01105	320	Pfam	Protein tyrosine and serine/threonine kinase	235	316	IPR001245	GO:0004672\|GO:0006468
	Cca08g01105	320	Pfam	Protein tyrosine and serine/threonine kinase	98	176	IPR001245	GO:0004672\|GO:0006468
	Cca08g01105	320	SUPERFAMILY	Protein kinase-like (PK-like)	236	316	IPR011009	-
	Cca08g01105	320	SUPERFAMILY	Protein kinase-like (PK-like)	99	176	IPR011009	-
	Cca08g01105	320	Pfam	beta-glucosidase 2, glycosyl-hydrolase family 116 N-term	195	239	IPR024462	-
	Cca08g01105	320	Pfam	beta-glucosidase 2, glycosyl-hydrolase family 116 N-term	58	102	IPR024462	-
	Cca08g01105	320	PANTHER	SERINE-THREONINE PROTEIN KINASE	98	192	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca08g01105	Cca-Chr8	29465559	29471172	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g01105	185	320	MAP Kinase Kinase Kinase	AT1G62400	41.509	8.30e-30	115

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Cca08g01105		PK_Tyr_Ser-Thr	9.9e-18	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g01105	-		-	ccaj:109791458	329.717