Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01093 ATGGACAGACTGATAAGGCTAGAGCCATCAAGCAGAGTGGTAATGAGGGTGGAGGAAGGGCAAAAGTGCGAGGGAAAAATCACGTTACGCAACGTGATGCACACAATGCCAGTGGCCTTCAGGCTCCAACCCCTCAACAAAACACGTTACACGGTGAAGCCCCAAACAGGGATCATATCcccacttgccacactcaccattcacatcacctgccaccacctcccaccctccactctccccctctcccccgactccttcctcctccacagcgcccTCGCCCCCGGCGCCGCCATCACCCACCCCTCCTCCATGCTCGACGCCCTCCCCGCCGACTGGTTCCGCAAGAAGCAACTCTTCACCGACTCCGCCCTCAAACTCATCTTCGTTGGCTCCCACATCGCTGCCCACCTCGTGGCGCACGCCGCAATGGACGATATAAGACACGTGCTCGAGAACAGTGACCCCTCGTGGAGGCTCGTTGACTCCGCCGACCCACAGGGCCAAACGCTGCTCCACCTTGCCGTTTCGCAAGGGAGAGCTGACCTCGTTCAGTTGCTCTTGGAATTCGGGCCTCGTGTTGATGCTCCCGACCGCTGTGGCTCCACGCCGCTCGAGGCTGCTGCTTCCTGCAACGAGGGCCTCATTGTTGAGCTTCTTTTGGCCCACCGAGCCCAGACGGAACGGTCCGAGTCGTCCGTGTTTGGCCCGATTCATCATGCTGCCAGAGGAGGACACGTGGAGGTTCTCAGACTCCTCTTGCTCAAAGGTGCCAGCGTGGATTCGCTCACCAAAGATGGCAGCACAGCTTTGCACCTTGCGGTTGAAGAGCAAAGGAGAGACTGTGTTAGACTCCTTCTGGCCAACCATGCCAGAACAGATGTTAAAAATGCAAGAGAAGGTGACACCCCTTTGCACGTGGCTTCAGCAATAGGGGACGAGAGCATGGTGAACCTCTTGCTGCAAAAGGGTGGTGCCAGCAAGTACGTGAGAAACGGGCACGGGAAAACCGCGTACGAGGTTGCAGTGGAAAACGGGCACGCGCGGCTCTTCGATGTCCTACGTTTGGGGGACAAACTGTGCGTGGCAGCAAGGAAAGGCGAAGTGAGGAGCATCCAGAAGCTTCTAGATAAAGGCGCGGGAATGAACGGGAGGGACCAAAACGGTTGGACGGCGTTGCACAGAGCTTCGTTCAAAGGGAGAGTGGAAGCGGTTAGGGCTCTTGTGGAGAGAGGGGTGGACGTGGACGCGAAGGACGAGGAAGGGTACACGGCGTTGCATTGTGCTGCTGAGTCGGGGCACGTTGATGTGACGGAGTTTTTGGTCAAGAAAGGTGCTCGTGTTGAGGCTAGGACTAGGAAGGGTGTGAGTGCGTTGCAAATAGCTGAGTCGTTGCACTATGTGGGGATCACGAGAGTTCTTGTTAATGGTGGGGCTAGTAGGGAACATTCTAATGTGGCAGCACTCGGTGCAATTGATTTTGGGAATAAAATGGAACTTGGGGATGGGGGTGGCATGAAGATGAAGAAGACGAGAGGTGGTCGTAGAGGTAGGGTGCTGAATGGAGGTGGCTTTAGTCGTTCATTGGCTTTGGCTGTGCTGTAA 1602 0.5268 MDRLIRLEPSSRVVMRVEEGQKCEGKITLRNVMHTMPVAFRLQPLNKTRYTVKPQTGIISPLATLTIHITCHHLPPSTLPLSPDSFLLHSALAPGAAITHPSSMLDALPADWFRKKQLFTDSALKLIFVGSHIAAHLVAHAAMDDIRHVLENSDPSWRLVDSADPQGQTLLHLAVSQGRADLVQLLLEFGPRVDAPDRCGSTPLEAAASCNEGLIVELLLAHRAQTERSESSVFGPIHHAARGGHVEVLRLLLLKGASVDSLTKDGSTALHLAVEEQRRDCVRLLLANHARTDVKNAREGDTPLHVASAIGDESMVNLLLQKGGASKYVRNGHGKTAYEVAVENGHARLFDVLRLGDKLCVAARKGEVRSIQKLLDKGAGMNGRDQNGWTALHRASFKGRVEAVRALVERGVDVDAKDEEGYTALHCAAESGHVDVTEFLVKKGARVEARTRKGVSALQIAESLHYVGITRVLVNGGASREHSNVAALGAIDFGNKMELGDGGGMKMKKTRGGRRGRVLNGGGFSRSLALAVL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01093 533 ProSiteProfiles Ankyrin repeat profile. 387 419 IPR002110 GO:0005515
Cca08g01093 533 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 533 - -
Cca08g01093 533 Pfam Ankyrin repeats (3 copies) 146 225 IPR002110 GO:0005515
Cca08g01093 533 Pfam Ankyrin repeats (3 copies) 236 295 IPR002110 GO:0005515
Cca08g01093 533 ProSiteProfiles Ankyrin repeat profile. 265 297 IPR002110 GO:0005515
Cca08g01093 533 ProSiteProfiles Ankyrin repeat profile. 236 264 IPR002110 GO:0005515
Cca08g01093 533 Gene3D - 230 303 IPR036770 -
Cca08g01093 533 ProSiteProfiles Ankyrin repeat region circular profile. 166 198 - -
Cca08g01093 533 ProSiteProfiles Ankyrin repeat region circular profile. 299 323 - -
Cca08g01093 533 Gene3D - 133 229 IPR036770 -
Cca08g01093 533 ProSiteProfiles Ankyrin repeat region circular profile. 265 296 - -
Cca08g01093 533 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 533 - -
Cca08g01093 533 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 129 IPR000535 -
Cca08g01093 533 ProSiteProfiles Ankyrin repeat region circular profile. 420 452 - -
Cca08g01093 533 ProSiteProfiles Ankyrin repeat region circular profile. 236 260 - -
Cca08g01093 533 Gene3D Immunoglobulins 1 128 IPR013783 -
Cca08g01093 533 ProSiteProfiles Ankyrin repeat profile. 166 198 IPR002110 GO:0005515
Cca08g01093 533 SUPERFAMILY Ankyrin repeat 160 486 IPR036770 -
Cca08g01093 533 Pfam Ankyrin repeat 300 326 IPR002110 GO:0005515
Cca08g01093 533 ProSiteProfiles Ankyrin repeat profile. 420 452 IPR002110 GO:0005515
Cca08g01093 533 SMART ANK_2a 420 449 IPR002110 GO:0005515
Cca08g01093 533 SMART ANK_2a 333 362 IPR002110 GO:0005515
Cca08g01093 533 SMART ANK_2a 299 329 IPR002110 GO:0005515
Cca08g01093 533 SMART ANK_2a 265 294 IPR002110 GO:0005515
Cca08g01093 533 SMART ANK_2a 232 261 IPR002110 GO:0005515
Cca08g01093 533 SMART ANK_2a 387 416 IPR002110 GO:0005515
Cca08g01093 533 SMART ANK_2a 166 195 IPR002110 GO:0005515
Cca08g01093 533 SMART ANK_2a 453 482 IPR002110 GO:0005515
Cca08g01093 533 SMART ANK_2a 199 228 IPR002110 GO:0005515
Cca08g01093 533 Pfam Ankyrin repeats (many copies) 398 441 IPR002110 GO:0005515
Cca08g01093 533 Gene3D - 355 499 IPR036770 -
Cca08g01093 533 Pfam MSP (Major sperm protein) domain 5 103 IPR000535 -
Cca08g01093 533 PRINTS Ankyrin repeat signature 167 182 IPR002110 GO:0005515
Cca08g01093 533 PRINTS Ankyrin repeat signature 403 417 IPR002110 GO:0005515
Cca08g01093 533 ProSiteProfiles Ankyrin repeat region circular profile. 387 419 - -
Cca08g01093 533 ProSiteProfiles Ankyrin repeat profile. 299 331 IPR002110 GO:0005515
Cca08g01093 533 Gene3D - 304 354 IPR036770 -
Cca08g01093 533 SUPERFAMILY PapD-like 2 133 IPR008962 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01093 Cca-Chr8 28944158 28946177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01093 359 463 Ion Channels AT4G32500 34.286 6.88e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01093 - - gmx:100782444 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01093 08 28944158 28946177 Cca08g01093 08 28944158 28946177 ECH
Cca07g00627 07 9042077 9043615 Cca08g01093 08 28944158 28946177 PCT