Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01090 ATGAGAAATAGGATCCATCCTTCAGTGCTTCTGGTTTCGGTAACAGTTTTCTTCTCTATCTCATATTCAGAACAACTGCAATCCTCTCACTCTCAGACCCTTCTAAGGATTCAACATCTATTGAACTTTCCAGCTGTTTTAAGCAGCTGGAACAACAACACAGACTTTTGCAGCACAGATTCAACATCTTCTCTTACTGTAGTGTGCTATGAGGGAACCATAACCCAGCTACACATAGTTGGTGAAGCAAGAGCTCTACTTCTCCCTAGGAATTTCTCAATAGATTCCTTTGTCACAACATTGGTCAGGCTTCCCAGTTTGAAAGTCCTCACTTTGGTTTCTCTTGGCATATGGGGCCCTTTACCTGGGAAGATTGCGCGTTTGTCATCACTGGAAATAGTCAATGTAAGTTCAAATTTTCTATATGGTTCCATCCCTCAAGATTTCTCATTACTGTCACACCTCCAAACACTTATTCTAGATGACAACATGTTTTCTGGACACCTTCCTGAATGGCTGGACTCCTTTCCAGCCTTAGCTGTGCTAAGTTTGAAAAACAATTTATTCAATGGCTCGCTTCCGGATTCGCTTAGTAGTCTGGAGACTATGAGAATTCTTTCACTTTCACATAACAATTTTTATGGATCAGTGCCTGATCTGCGCCGTTTGACGAATCTCCAAGTGCTGGAAATGGATAATAATGCTTTTGGACCTCAGTTTCCCTTGCTTGGTGACAAATTGGTTACTCTAGTACTAAGAAACAACAAGTTCAGGTCTAGTATCCCTGGTGAAGTGAGCTCATATTATCAACTTGAGAGACTTGACATCTCAGCAAACACATTTGTTGGGCCATTCCAACTAGAACTTTTATCACTTCCTTCTATTGCATATCTGAACATTTCTGGGAACAAATTAACAGGAATGCTTTTTGAGAATCTGTCTTGTAGCCCTGGACTTGAAGCAGTGGATTTATCCTCAAATCTTTTGACTGGGACTTTACCAAAATGCTTAATGTCAAATACCAATGACAGGACTGTGTTATATGATAGAAATTGTCTAGAAGAAACAAATCAAAATCAGCATGCACCGCCCTTTTGCCACACTGAAGCCATAGCTGTGGGAATAGTGCCTGAGGGAAAGAAGCACAAACGAGTATCTAAGGCTGTTCTCTCCATTGGGATAGTATGTGTAACTTTTGGAGGGATAGCAATTGTTGCACTGATTTTCTTTATTATTAGAAGGGTAAATTTCAAAACCAAAATCAAGAGTCCTCCAACAAAATTAATATCAGAGAATGCAGCTTCCGGATACACCTCAAAGTTACTCTCTGATGCAAGGTATATATCTCAAAACATGAAGTTCGGAACAGTTGGCCTGCCACCTTATCGAGCTTTCTCTCTTGATGAGATTGTAGCAGCTACAAGCAACTTTGACACAGCTTCTTTCATGGGGGAAGGTTCTCAGGGAAAGTTGCACAGAGGTCAACTAAAGGATGGTGTACTTGTTGCCATTAGAAGTGTAAAAATGACTAAAAGCTACAGCACTCAAGATTTTATGCATAACATAGAGCTGATATCGAAATACAGGCATCGTCATTTAGTTAGCGTTCTTGGACACTGCTTTGAATGCTATTTGGATGATTCAAGTGTCAGCAGCATATTTATTGTCTTTGAGTATGTACCAAATGGCACGCTCAAGAGCTGGATCTCAGATGGGCACTACAGAAAATCCCTGACATGGACGCAACGCATAGAAGCTGCAATTGGAGTAGCAAAGGGCATCCAATTTCTGCATACAGGGATTGTCCCTGGTGTATATTCAAACAATCTTAAAATAACAGATGTTTTACTTGACCAAAATTTTACTGCAAAAATCAGCAGTTATGGCCTGCCTTTGTTATCTAATATGGGAAAGGTTGGGCAAGGTAATCATTCCAGCGGATTCAAAAGTTCTAGCATTAACAAAAGTGTAAAAAATGAAGACAAGTCTGATGTGTATGACTTTGGAGTAATACTACTGGAACTCATTCTAGGAAGGACAATAAAGTCAAGGAATGTGAAAACTTTAAAGGATCTGTTGCAAGCAAGCATAACAGCTGATGGTGAAGCTAGGAGGAGCATTATAGATCCAGCAGTTCGCAAGGCGTGCTTGGATCAATCACTGAAGACAATGATGGAGATTTGTGTGAGGTGCCTAGTGAAAGAGCCAGCAGAGAGGCCCTCTATAGAGGATGTTTTGTGGAATTTGCAGTTTGCTGCTCAAGTCCAAGATGCATGGAGAGGGGACTCTCTAAGTAGTAGCGATGGATCTCCCATCTCACCTTTAGCATCACGACGAATGGCCTTCCATCATTGA 2355 0.4085 MRNRIHPSVLLVSVTVFFSISYSEQLQSSHSQTLLRIQHLLNFPAVLSSWNNNTDFCSTDSTSSLTVVCYEGTITQLHIVGEARALLLPRNFSIDSFVTTLVRLPSLKVLTLVSLGIWGPLPGKIARLSSLEIVNVSSNFLYGSIPQDFSLLSHLQTLILDDNMFSGHLPEWLDSFPALAVLSLKNNLFNGSLPDSLSSLETMRILSLSHNNFYGSVPDLRRLTNLQVLEMDNNAFGPQFPLLGDKLVTLVLRNNKFRSSIPGEVSSYYQLERLDISANTFVGPFQLELLSLPSIAYLNISGNKLTGMLFENLSCSPGLEAVDLSSNLLTGTLPKCLMSNTNDRTVLYDRNCLEETNQNQHAPPFCHTEAIAVGIVPEGKKHKRVSKAVLSIGIVCVTFGGIAIVALIFFIIRRVNFKTKIKSPPTKLISENAASGYTSKLLSDARYISQNMKFGTVGLPPYRAFSLDEIVAATSNFDTASFMGEGSQGKLHRGQLKDGVLVAIRSVKMTKSYSTQDFMHNIELISKYRHRHLVSVLGHCFECYLDDSSVSSIFIVFEYVPNGTLKSWISDGHYRKSLTWTQRIEAAIGVAKGIQFLHTGIVPGVYSNNLKITDVLLDQNFTAKISSYGLPLLSNMGKVGQGNHSSGFKSSSINKSVKNEDKSDVYDFGVILLELILGRTIKSRNVKTLKDLLQASITADGEARRSIIDPAVRKACLDQSLKTMMEICVRCLVKEPAERPSIEDVLWNLQFAAQVQDAWRGDSLSSSDGSPISPLASRRMAFHH 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01090 784 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 9 769 - -
Cca08g01090 784 SUPERFAMILY L domain-like 101 353 - -
Cca08g01090 784 MobiDBLite consensus disorder prediction 762 784 - -
Cca08g01090 784 ProSiteProfiles Protein kinase domain profile. 477 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01090 784 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 9 769 - -
Cca08g01090 784 Gene3D Ribonuclease Inhibitor 243 362 IPR032675 -
Cca08g01090 784 Pfam Protein tyrosine and serine/threonine kinase 482 746 IPR001245 GO:0004672|GO:0006468
Cca08g01090 784 Gene3D Transferase(Phosphotransferase) domain 1 560 763 - -
Cca08g01090 784 Gene3D Phosphorylase Kinase; domain 1 441 559 - -
Cca08g01090 784 Gene3D Ribonuclease Inhibitor 27 242 IPR032675 -
Cca08g01090 784 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Cca08g01090 784 SUPERFAMILY Protein kinase-like (PK-like) 456 751 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01090 Cca-Chr8 28805662 28811489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01090 43 777 Miscellaneous Gene Families AT3G03770 62.703 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Cca08g01090 PK_Tyr_Ser-Thr 5.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01090 - - gmx:100813207 1339.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01090 08 28805662 28811489 Cca08g01090 08 28805662 28811489 ECH