Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01089 ATGGCCGAGCGTAGTAATGATAGTGGTGACAATGATAATAGTAGCGCCTCTGGAAGCCGACGAAGAGGCGCCACTTCAAGGCGTGTCATAACAACAACATTGCAAGAGGAAGCATTTGTGGTACCTTCACCAGTGACACCATGTGGAGCTTGCAAGTTCTTGAGGAGGAAGTGCATTGGAGGGTGCATCTTTGCACCCCACTTTGGAACTGACCAAGGTGCAGCCAAGTTTGCAGCTGTGCACAAAGTTTTCGGAGCTAGCAATGTCTCAAAGCTCTTGCACAGCATTCCGGCGAACCTCCGCCATGAGGCGGCAACAACCATATCCTATGAGGCTCAGGCAAGGCTGTCTGATCCGGTTTATGGTTGTGTGTCTACCATACTTGCTTTGCAACAACAGGTGGCATCTTTGCAAGCAGAGTTGTCTATGTTTCAAACTCAGCTGATGAACAGTAGATTTGCCTATGCAAGTGCTCTTCAGACCACACAAATGCAACAACCAAACATGAATGCAGCAGCACTGCAACCAACATACTCCAACAACTCATGTGCTTCCACCAACCTCATGAACTTGAGCAACTTCAATACCAATAACTCTGGCTTTAACCTTGCAATGGAGACAGCACCCTCATCACACAGTTTGGAGCCTCTTCAACTCTCAAGGTTGTCTCAATATGAGGAAGAGGATGAAGAAGAAAGCAGGATTCACCAAGCCTTCAATCACCGTCATTAA 732 0.474 MAERSNDSGDNDNSSASGSRRRGATSRRVITTTLQEEAFVVPSPVTPCGACKFLRRKCIGGCIFAPHFGTDQGAAKFAAVHKVFGASNVSKLLHSIPANLRHEAATTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSMFQTQLMNSRFAYASALQTTQMQQPNMNAAALQPTYSNNSCASTNLMNLSNFNTNNSGFNLAMETAPSSHSLEPLQLSRLSQYEEEDEEESRIHQAFNHRH 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01089 243 ProSiteProfiles LOB domain profile. 46 148 IPR004883 -
Cca08g01089 243 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 237 - -
Cca08g01089 243 MobiDBLite consensus disorder prediction 7 27 - -
Cca08g01089 243 MobiDBLite consensus disorder prediction 1 27 - -
Cca08g01089 243 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 10 237 - -
Cca08g01089 243 MobiDBLite consensus disorder prediction 223 243 - -
Cca08g01089 243 Pfam Lateral organ boundaries (LOB) domain 47 145 IPR004883 -
Cca08g01089 243 Coils Coil 127 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01089 Cca-Chr8 28751293 28754483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01089 3 233 AS2 family AT3G03760 54.065 2.24e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca08g01089 LOB 4.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01089 - - aprc:113866578 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01089 08 28751293 28754483 Cca08g01089 08 28751293 28754483 ECH