Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01088 ATGGTTGAGCAAGATGGATTCTTCCCTGCAGATATGCTTTTCTTGGCTAGTACGAATGTAAATGGTGTCTGCTACATTGAGACTGCTAATTTGGATGGTGAAACCAATTTGAAGATTAGGAAAACATTGGAGAATATTTGGGATTACTTGACTCCAGAGAAGGCATCTGAATTTAAAGCCTGCATTCTTGATGGGACTTGTTTTTACCAAATGGGCATGTGCATTCTTACTCTACTGTTGTCTCATCACTTCTGGGGTATATTCAGCTTCACCCTTCCAGAGCTGAGAGCTTACACCTTTCACCGCCGTTCTCATAAACGCAGCGAGGGGTTACGTGGCCAGATTGAGAGAAATGCAGCAATTGAAGAAACCCTAAACGTCAAATTTCGTGTGCCGCGTTTTGATGTTTTTGCTTGCTACTTCGTTTGGATTTTGCTTTGTGTCTTCGTGTGCAGCATTTTGGTGTTTTCGCTTGTGAAGGAGAGTAATGCTGATCCTGAAGTTAACAAGCGTGAGAAGGCCAAATTGAGAGAAATGCAGCAATTGAAGAAACAAAAAATTCAGGAGATATTGGACGCGCAGAATGCATCCATTGATGCTGATATGAATAATAGAGGAAAGGGCCGATTGAACTATCTCCTACAGCAAACTGAACTGTTTGCTCATTTTGCCAAAGGTGACCAATCTTCTCAAAAGAAGAAGACAAAGGGGAGGAACTATCTGAAAATTCGTGAATATGACGACAATTGCATGACAGATAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGAGGCATTCTGTCGGCCATAAATGTGGAATTCCTGGAGCATATGTCTTGTGGTATCGCCCATTATATCGTGCCTTTAGGACAGATAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGGCGCAGTTCTTGGCGCTGGGCGTGCATTTATCAGAGGAAACCATTTCAAACTCACGCTGA 981 0.4179 MVEQDGFFPADMLFLASTNVNGVCYIETANLDGETNLKIRKTLENIWDYLTPEKASEFKACILDGTCFYQMGMCILTLLLSHHFWGIFSFTLPELRAYTFHRRSHKRSEGLRGQIERNAAIEETLNVKFRVPRFDVFACYFVWILLCVFVCSILVFSLVKESNADPEVNKREKAKLREMQQLKKQKIQEILDAQNASIDADMNNRGKGRLNYLLQQTELFAHFAKGDQSSQKKKTKGRNYLKIREYDDNCMTDSALNFGWFFLFYLRHSVGHKCGIPGAYVLWYRPLYRAFRTDSALNFGWFFLFYLAQFLALGVHLSEETISNSR 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01088 326 Coils Coil 169 196 - -
Cca08g01088 326 PANTHER SNF2/RAD54 HELICASE FAMILY 162 241 - -
Cca08g01088 326 Pfam SCAMP family 275 311 IPR007273 GO:0015031|GO:0016021
Cca08g01088 326 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 162 241 - -
Cca08g01088 326 SUPERFAMILY Calcium ATPase, transduction domain A 2 48 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01088 Cca-Chr8 28732019 28747370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01088 2 62 Primary Pumps ATPases AT1G59820 72.131 1.64e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01088 K11654 - gmx:100791510 140.969