Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01082 ATGTCCAGGTCACAAGCCCTCTCGCCTTCTCGGCTCAGGGCTGGAAGGCAAGTGTGCCGTCCAGGTCGAAATCCGACCTGCACCTCTATTCGACACGCAATCCTTCCACGCTCGTCTTCGCTCTCCATCTGGACAAAGATCCATCGCGACACGACCGTTACTTCGACGACGATGGATGGCAACAAGGACGACGCGTTGAAGTGTTTGAGAATCGGCAAAGAGGCTTTAGAAAGCGGCGATCGTTCACGCGCCCTCAAGTTCGTGACGAAGGCGCGTCGCCTCGATCCCACCCTCCTCGTGGACGATCTACTGTCCGCCATAGAGGCCGACGCGGGGGATccgcccgccgacgcctccgccaccgccgccgccgcGGAGCCCAGCAAGCCCCCCGACCAGCCTTCCATCCGGCGCAGGGCTAGCGCGGCGGCAGGTTCCTCGTTGTCTTCGGCCTCATACACCGAAGAGCAGATTTCAATTGTCAGAGAGATTAGGAGGAAGAAGAACTTGTATGAGATATTGGGATTGGAGAGAAGTTGCAGTGTTGAGGATGTGAGGAAGTCTTACAGGAAACTATCTCTGAAGGTTCATCCCGATAAGAACAAAGCCCCTGGCGCCGAGGAAGCCTTCAAGGCCGTTTCCAAGGCTTTTCAGTGTCTTAGCAATGAAGAGAGCAGGAGGAAGTATGACATTTCTGGAGAGGATGAAGCGGTTTACGAGCAGCGCGCGAGGCCCGCTGCGAGGGCATACAATGGTTACTATGAGGCTGACATTGATGCTGAGGAGATATTTAGGAATTTCTTCTTTGGAGTTGCTGCCGGTGCTGCTTATTTTGCTTATAAACTTTTTGCCTTCATCGGAGCCCTTGAGTATCCGCCGCAGAGCGAGGAACGGGCGGTGGTGGATGAAAGGGTTGAGAGGGAGTACTTCAGCATTCTCCGCCAGAACTGTCGCTTCGAGATGCAGCGTCGCCAATGGGGGTATATTCGGGAAACGCCGCACTGCGATATGCTGCACAAGTTTGATACGTGA 1032 0.5242 MSRSQALSPSRLRAGRQVCRPGRNPTCTSIRHAILPRSSSLSIWTKIHRDTTVTSTTMDGNKDDALKCLRIGKEALESGDRSRALKFVTKARRLDPTLLVDDLLSAIEADAGDPPADASATAAAAEPSKPPDQPSIRRRASAAAGSSLSSASYTEEQISIVREIRRKKNLYEILGLERSCSVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNEESRRKYDISGEDEAVYEQRARPAARAYNGYYEADIDAEEIFRNFFFGVAAGAAYFAYKLFAFIGALEYPPQSEERAVVDERVEREYFSILRQNCRFEMQRRQWGYIRETPHCDMLHKFDT 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01082 343 Gene3D DnaJ domain 165 277 IPR036869 -
Cca08g01082 343 MobiDBLite consensus disorder prediction 110 148 - -
Cca08g01082 343 ProSitePatterns Nt-dnaJ domain signature. 210 229 IPR018253 -
Cca08g01082 343 ProSiteProfiles dnaJ domain profile. 169 233 IPR001623 -
Cca08g01082 343 SUPERFAMILY Chaperone J-domain 166 279 IPR036869 -
Cca08g01082 343 PANTHER - 58 274 - -
Cca08g01082 343 PANTHER - 290 343 - -
Cca08g01082 343 SMART dnaj_3 168 225 IPR001623 -
Cca08g01082 343 PANTHER AT29763P-RELATED 58 274 - -
Cca08g01082 343 PANTHER AT29763P-RELATED 290 343 - -
Cca08g01082 343 Pfam DnaJ domain 169 230 IPR001623 -
Cca08g01082 343 CDD DnaJ 169 222 IPR001623 -
Cca08g01082 343 PRINTS DnaJ domain signature 189 204 IPR001623 -
Cca08g01082 343 PRINTS DnaJ domain signature 205 225 IPR001623 -
Cca08g01082 343 PRINTS DnaJ domain signature 171 189 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01082 Cca-Chr8 28295475 28306258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01082 164 230 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.620 1.09e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01082 K09518 - gmx:100793797 306.99