Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01077 ATGTCTCCAAAATCAAAGTTTTGGGGTAAGAAAGGCTTCTTCAAGGGGAAGAAGGGGAAGAAGCGCAAGAGGTATGGATCCCCTTCCAAACAGAAAGACTCACCATTGCACCGTGGTTTTAAGCAGCACGAATCCTCTAATTTTGTGGAATCTGCTGGTCAAGGAGATGTAGAAGCTGTTACTCCTGCTACTTGCTCTAGCACAAAGACTGAGTCACGTGACATGAGGCAGAGGGATGACGAGAGTCATCCCTCGGCTTCTCGACCTAGTGGCAGTGGTGCACATCCTAGAGACCCTAGACCCCAGTTCTGGGAAGCTGCTAAGAAGGCCTCTTCTCTTTGTTTGCCCTCTAAGAGGCCCATTCATGTTACGCTGTCTCATCCCGAAAGGGAGAGTTTCGAGGGATGGAGGCCACTAAAAAAGACCCGTCCTGGAAGCTTCTACTCGCAAAGCCACAGAAAGAATGGGAGCCAAGAGACCACGGGTAAGAAGCCCAGGCTGAGTTGGGGTGATGGACTTGCTAAATTTGAGAAAACCCAAACTAATGATGTGAGTGCAAACAAAGATGGTGATTTCTTCAACCCCAACTTGTTGGTGGAGAAAACTACAAGTGCTACAGGTTTTGCAACTCCATCTTTTGGTGCCTTCACAGGTGTGGGTGATATGATGAGTGTAAGAGCTGCAAATGTGGGCAACAGTGATGGAAATTTGGTTGGTTCACCTTGTCTAGGGTCACAAAATCAAGGGCAGGGAATTTTGGAGAGGATAGATGCCAACTCTTTTACCAGTTTGAGTTCTTCACTTGCTGAGTTGCTAGAGTCTGTTGATCCGAGCTCTGAGGATTATAGTCTAGCAAGATCCACTGCAATGAATAAGTTGGTGATCTGGAAAGCTTTCGTGACAAACGTATTGGAGGTGactgaaactgaaattgattcacttgaaaatgaactgaaaTCATTACAATCTAAATCCAGGGATAGGTTGCCATGTTCAGTAGCAACTAGCTCCCTATTGGTATGTCACAGTGCAATGTCAAGTAATCAAGATATTGGAAGATCTGATATGGTTACTGGTTCAAAGCCATTGCAAATTGCTCCTTTGGAATCTAACCTAGTCAATGTGCAGAAGCTGCCTCTTTCTACTAACTTGCATGGCATGCATAGCAATAGCAAGGAAGATAATATTAACAATTTGGGAATAGCAACATCAAAAATTTTAGATGCCCCACTCTTGATTAAAGCAGTATCTTCATGTGATACAACAAGTACTTGCTCCAAAGACTTGGGTAGAATTCAGTCTGCAACCAAGAAATGCTTTGTCCCATATACATATGGACAAGTTGCTTGTGTATCTTCTTGTGGTGATGGTAATTCATCTTCATCAATGAATACTGAAGATGTGATGAATGCTAACCCTAGTGCCAGCTTTTATTTTGGTACTGAAAATACTTTATATGATACAATTATTTCTTCCAATAGAGAATCTGCAAAAAGAGCATCTGAAGCATTTGCTATGTTATTGCCTAAAGAATGTGGTAAGATCAGCAATGTTGGTGTTTGCAGCAGCTCACTCTCAAATAATGATGCATTCATTAAGGAAAAGCTTGCAGAGAGAAAAAGGTTTGAAAGATTTAAGGAGATGGTTTTGACAATTAAATATAAAGCCTTCAATCACCTGTGGGAAAAAGATCTATGCTTACGATCTACGAGGAAGTGCCCCTCAACATCTCACAGTAATCTTGAATTGGATCTGCAAACTATCAGTAAGGGTTGTAAGAAGAACCGATCCTCTATGCGTCATCGTTTTCCTTTCCCAGGGGGAAAACAACTAAGCTTGGTTCCAACATCTGAGATGATAAGTTATACAAGTCAGTTGCTTTCAGAAATATCCCATCATGAAGTTAACGAAAACATCTTGAAGATGCCAACATTAATTTTGGATAAAAGGGATAAAATATTTTCAATGTTTACATCTAGTAATGGGCTGGTAGATGATCCATTGACTATTGAGAAAGAAAGATCTATGATCAACCCTTGGACATTTGAAGAGAGAAATATTTTCTTGGAGAAATTTGTAGCATTTGGAAAAGATTTTCGAAAAATTTCTTCTTTCCTTGACCACAAGACAACTGCGGACTGTGTTGAATTCTACTACAAAAATCATAAGTCTGATTTTTTTGAGAAAACAAAGAAAACAAAGGCTAGTAAGTACCGGAAGTTGCGTACAACCAAAAATAGCTTGATGGCATCAAGTAAAAAAAGGAATCGTAAGGAGAATGTTGATTCACTTCAGATTTTGAATGAAGCTCCAGTGATGGCACGTCGCACTCAAGGAAATCGAAGAACACGTCCAAGAAAACCCCGTCTTTGGAAGGGATGTGATAATATGAAAAAATTAACAGGTGGTGACAGGATCACTGAGAGATCAAGTCTTGATGTTCTTCAAGATGAAAGAGAGAGAGTTGCAGCTGATGCATTGGTTAGTTTATGTGATTCTCGTTCATCTAGTAAGGCTGTCATAACAAGATCAGTTGATCCCGTGGAAGCTATCAGGGACAAGCCGTGCTTGAAAATGAGGATTCAATGCCAACAACCTGTGATGTCTCAGCCTGATGTTACTCAGGATATTGATCATGGAACTCGTTATGATGAGGGATGCGGTGAAATAGATGATTCTGATTGGACAAATGAGGAGAAGGCAACCTTTCTTCAAGCTGTATCATCTTTTGGAAAAGATTTTACAATGATTGCAAAACATGTAGGGACAAAGTCCAAGGATCAGTGTAAGATATTTTTCATCAAGGGTAAAAAATGGCCAGGATTAAATCTCATGCACCACAAACCAGACTATAATGTATCTCCAGTGAATGATTTAAATAGTGGGAGGAATGACAAAGATGATGGGTGTGTTGTGGTGGCAGATACAATCATTGGTAGTGATAAGTCAGGCACCAAAACAAATGGAGACGAGCCTTCATCTTCCATGAACTTGAACGATGATGAATCCAAACCTGCGGAAGCTGAGAATTTGTCAACCGACATAAATGAATCAAAGGAACTAGAAGCGGAAGTAGATCATGAGGATGGAAACATGGCTTCTAATTCATGCGCCTTAAACAGTGAGTCAGCTTCAGAAAAAACACCTAGGAATGTTGTGTTAAAATTGTTTGGAAAGACAATAACCATTCCTTTATCTTCCCAGAAGTCTGATTTAGTTTCCTAG 3225 0.4006 MSPKSKFWGKKGFFKGKKGKKRKRYGSPSKQKDSPLHRGFKQHESSNFVESAGQGDVEAVTPATCSSTKTESRDMRQRDDESHPSASRPSGSGAHPRDPRPQFWEAAKKASSLCLPSKRPIHVTLSHPERESFEGWRPLKKTRPGSFYSQSHRKNGSQETTGKKPRLSWGDGLAKFEKTQTNDVSANKDGDFFNPNLLVEKTTSATGFATPSFGAFTGVGDMMSVRAANVGNSDGNLVGSPCLGSQNQGQGILERIDANSFTSLSSSLAELLESVDPSSEDYSLARSTAMNKLVIWKAFVTNVLEVTETEIDSLENELKSLQSKSRDRLPCSVATSSLLVCHSAMSSNQDIGRSDMVTGSKPLQIAPLESNLVNVQKLPLSTNLHGMHSNSKEDNINNLGIATSKILDAPLLIKAVSSCDTTSTCSKDLGRIQSATKKCFVPYTYGQVACVSSCGDGNSSSSMNTEDVMNANPSASFYFGTENTLYDTIISSNRESAKRASEAFAMLLPKECGKISNVGVCSSSLSNNDAFIKEKLAERKRFERFKEMVLTIKYKAFNHLWEKDLCLRSTRKCPSTSHSNLELDLQTISKGCKKNRSSMRHRFPFPGGKQLSLVPTSEMISYTSQLLSEISHHEVNENILKMPTLILDKRDKIFSMFTSSNGLVDDPLTIEKERSMINPWTFEERNIFLEKFVAFGKDFRKISSFLDHKTTADCVEFYYKNHKSDFFEKTKKTKASKYRKLRTTKNSLMASSKKRNRKENVDSLQILNEAPVMARRTQGNRRTRPRKPRLWKGCDNMKKLTGGDRITERSSLDVLQDERERVAADALVSLCDSRSSSKAVITRSVDPVEAIRDKPCLKMRIQCQQPVMSQPDVTQDIDHGTRYDEGCGEIDDSDWTNEEKATFLQAVSSFGKDFTMIAKHVGTKSKDQCKIFFIKGKKWPGLNLMHHKPDYNVSPVNDLNSGRNDKDDGCVVVADTIIGSDKSGTKTNGDEPSSSMNLNDDESKPAEAENLSTDINESKELEAEVDHEDGNMASNSCALNSESASEKTPRNVVLKLFGKTITIPLSSQKSDLVS 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01077 1074 MobiDBLite consensus disorder prediction 28 44 - -
Cca08g01077 1074 Pfam Myb-like DNA-binding domain 894 933 IPR001005 -
Cca08g01077 1074 Gene3D - 656 728 - -
Cca08g01077 1074 MobiDBLite consensus disorder prediction 10 27 - -
Cca08g01077 1074 Gene3D - 821 949 - -
Cca08g01077 1074 MobiDBLite consensus disorder prediction 1 101 - -
Cca08g01077 1074 Coils Coil 297 324 - -
Cca08g01077 1074 ProSiteProfiles SANT domain profile. 675 726 IPR017884 -
Cca08g01077 1074 SUPERFAMILY Homeodomain-like 893 940 IPR009057 -
Cca08g01077 1074 MobiDBLite consensus disorder prediction 981 1001 - -
Cca08g01077 1074 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1037 - -
Cca08g01077 1074 MobiDBLite consensus disorder prediction 981 1050 - -
Cca08g01077 1074 SMART sant 676 724 IPR001005 -
Cca08g01077 1074 SMART sant 891 939 IPR001005 -
Cca08g01077 1074 MobiDBLite consensus disorder prediction 126 169 - -
Cca08g01077 1074 ProSiteProfiles SANT domain profile. 890 941 IPR017884 -
Cca08g01077 1074 MobiDBLite consensus disorder prediction 1033 1048 - -
Cca08g01077 1074 MobiDBLite consensus disorder prediction 71 85 - -
Cca08g01077 1074 SUPERFAMILY Homeodomain-like 663 723 IPR009057 -
Cca08g01077 1074 CDD SANT 895 935 IPR001005 -
Cca08g01077 1074 MobiDBLite consensus disorder prediction 144 164 - -
Cca08g01077 1074 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1037 - -
Cca08g01077 1074 MobiDBLite consensus disorder prediction 1002 1029 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01077 Cca-Chr8 28034244 28050060 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca08g01077 Myb_DNA-binding 1.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01077 - - ccaj:109818354 2076.6