Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01050 ATGGCGACGAGGTACTGGGTAGTGTCTCTCCCCGTTCAAAATTCCGCATCCACTCTTTGGAACCGATTGCAGGAACAAATCTCCAAACATTCCTTCGACACTCCTCTTTACAGATTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCTCTCAGCGATGATCTCGTCAAGTCGAACAGTTTCATGGAGGGAGTGTCGCACAAGATCAGGCGGCAGATTGAGGAGCTGGAGAGAGTGTCTGGCGTGGTGAGCAGTAGTTTGACGGTGGATGGAGTCCCTGTTGATTCCTACTTGACGAGGTTTGTTTGGGATGAAGCCAAGTACCCGACTATGTCGCCACTGAAGGAGATTGTGGATGGGATTCATGGTCAGGTGGCAAAGATTGAAGATGATCTCAAGGTTCGTGTTTCTGAGTACAACAATATCCGCAGTCAGCTTAATGCCATCAACCGGAAGCAAAGTGGAAGCTTAGCTGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGATATTATAACTTCAGAACATTTAACTACCCTTCTTGCAATTGTTTCCAAGTATTCACAGAAGGATTGGCTCTCAAGCTATGAAACATTAACAAACTATGTGGTTCCCAGGTCTTCCAAGAAGTTGTATGAGGATAATGAATATGCTCTTTATACTGTGACACTCTTCAGTCGAGTTGCAGACAATTTTAGAACTAGTGCACGGGAAAAAGGGTTCCAAATTCGTGATTTTGAATATAGTCAAGAATCACATGAGAGTCGAAAGCAGGAGTTAGAGAAATTGATGGGAGACCAGGAAAGTTTGAAGGCTTCTCTATTGCAGTGGTGTTATACCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCATTTTTGTGCAGTACGTGTATTTACTGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTGGCATGCGTTTTATCTCCATCAGTCAAAGCCGAGAAAAAAGTACGTTCTATCCTTGAAGGGTTGAGTGACAGCACGAATAGTGCATATTGGAAGACCGAGGATGAAGGAGTTGGGATGGCTGGCCTGGCAGGGGATGCTGATGCCTACCCTTATGTCTCCTTCACCATCAATCTGGTTTGA 1128 0.4548 MATRYWVVSLPVQNSASTLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNSFMEGVSHKIRRQIEELERVSGVVSSSLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHGQVAKIEDDLKVRVSEYNNIRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLTTLLAIVSKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYSQESHESRKQELEKLMGDQESLKASLLQWCYTSYGEVFSSWMHFCAVRVFTESILRYGLPPSFLACVLSPSVKAEKKVRSILEGLSDSTNSAYWKTEDEGVGMAGLAGDADAYPYVSFTINLV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01050 375 Gene3D - 163 251 - -
Cca08g01050 375 SUPERFAMILY Vacuolar ATP synthase subunit C 1 374 IPR036132 GO:0015078|GO:0033180|GO:1902600
Cca08g01050 375 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 374 - -
Cca08g01050 375 Gene3D - 41 312 - -
Cca08g01050 375 Pfam V-ATPase subunit C 5 368 IPR004907 GO:0033180|GO:0046961|GO:1902600
Cca08g01050 375 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Cca08g01050 375 CDD V-ATPase_C 5 372 IPR004907 GO:0033180|GO:0046961|GO:1902600
Cca08g01050 375 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 374 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01050 Cca-Chr8 26954085 26964013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01050 1 374 Primary Pumps ATPases(2) AT1G12840 83.155 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01050 K02148 - gmx:100803728 698.738