Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01041 ATGGCTATGCAATCATCCTTATCTTCCTATGGATTCACCTACGATGTGTTTCTCAGTTTCCGAGGGAAAGATACTCGTTATGGTTTTACCGGCAATCTCTATAATGCCCTTCGGGACAAGGGAATTCACACCTTCATCGATGACAAGGGACTCCGGAGAGGGGACAAAATCACGTTGGCCCTTGAGAAAGCAATTCAAGAGTCCAGAATTTTTATCATTGTGCTTTCTCAAAACTATGCATCTTCCTCCTTTTGCTTAAACGAACTAGCTTACATCCTTAAGCTCGTTAAGGGTAAAGGTTTGTTGGTTTTGCCTGTCTTTTACTACGTGGATCCTTCTGATGCACGACACCACAGAGGTAGTTTTGGAGAAGCTTTGGCTAATTATGAGAAGAAGTTCAACGTTAATAAGGGTTTTCAGCATAACACAAAGAAGTTGGAGGAATGGAAGATGGCTATGCATCAGGCAGCTAACTTGTCTGGCTATCATTTCAAACAGGGGGTCAAGTATGAATTTGAGTTTATTAAGGAAATAGTTGAATTGGTCTCTAGCAAGATTAATCGTGCTCCTTTACATGTGGCGGATTATCCAGTTGGACTAGAGTCACAAGTGCTAAGAGTAAAGTTGCTTTTGGACATTGGATCTGATGATGTCGTCCACATGGTAGGGATCCATGGGCTTGGTGGCGTTGGTAAAACCACACTCGCTGTTGCAGTTTGTAATTCTATTGCTGACCATTTTGAAGCTTTATGCTTTCTTGAAAATGTGAGAGAAACTGCAGGAAAACACGGTTTACAACATGTCCAAAGCAACCTTCTTTCTGAAGTAGTTGGAGAGAAGGAGATTAAGTTAACGAGTGTGAAACAAGGAATTTCCATAATACAACATAGGCTCCAGCAAAAGAAGGTTCTTTTGATTGTAGATGATGTTGATAAAATGGAACAGTTACATGCGATTGTTGGAAGATCTGATTGGTTTGGTCATGGAAGTAGAATCATCGTCACAACTCGAGACAAACAGTTACTAGCATGTCACGGTGTTAAAAGAACATATGAGTTGAAAGAGTTGAATAAAGAACATGCTTTACAATTACTTTGTTGGAAAGCTTTTAAGTTGGAATATTTTGACCCATGTTACCATGATGTCTTGAATCGAGCAATAACTTATGTTTCTGGCCTTCCTCTGGCTTTAGAAGTTATAGGTTCCAACTTATTTGGAAAAAGTATTGAACAATGGGAATGTGCATTGAATCGGTATGAAAGAATTCCTAATAAAGAGATTCAAGAGATACTTAGAGTAAGTTATGATGCTTTGGACGAAGATGAACAAAGTGTTTTTCTTGACATTGCTTGTTGCTACAAAGAATATGAATTAGCAGAGGTTGAAGATATACTTCATGCTCATTATGACCATTGCATGAAACATCAAATCGGAGTGTTGGTTCAAAAATCTCTTATAAAGATTACTTTTGATGGAAAGGTGACACTACACGACTTGATAGAGGACATGGGTAAAGAAATTGTTCGGCAAGAATCACCAAAAGAGCCTGGGAAGCGTAGCAGGTTATGGTTCTCTAAGGATATAGTTGAAGTTTTACAAGAAAATAAGGGAACTAGTCAGACTGAAATCATATTTATGGATTTCTCCTTATTTGAGAAAGTAGAGTGGGACGGATATGCCTTCAAACGGATGAAAAATCTCAAAACACTTATTATTAGAAGTGGTCATTTTTCCAAAGGTCCCAAGCATCTTCCTAACATTTTAAGAGTATTGGAGTGGTGGAGATATCCTTCACAGGATTTGCCGTTTGATTTTCACCCAAAAAAACTTGTGATATGCAAATTACCCAAGAGTAGCTTTTCATCACTCGAGTTGGCTGCCATATTATTGAAAAAGATGTTCGTGAATTTAACAAGTTTAAATTTTGACAAGTGTCAGTGTTTAACTCAGATACCAGATTTATCCTGTCTCCCACAATTAGAAAAATTGTCATTTCAGCTGTGTCAAAATTTGTTTACAGTTCACTATTCGGTTGGTTTCTTGGAAAAACTTAAAATCTTGAATGGTCTTGGTTGCATCAAGCTTAAGAGTTTTCCACCCATCAAGTTGACCTCTCTTGAACAACTTGAATTGTCTTTTTGTATCGGTCTCAAGAGATTTCCTGAAATATTAGGAAAGATGGAAAACATAACACCAAATGGATTGGAAGAAACTCGCATAAAAAAGATTTCCCTTTCATTTAAAAATCTTACTCAGCTTCAGCAGTTGTATGTGATGCGAGGAGTGAGTGCAAAAAGAGTGAGCTCAACCACAGTGTTCTCAAACGTTCAACGTCTTCGTCTCCGAAGTTGCAACTTATCAGATGATTTTTTTCCAACAGTTATCCCATGGTTTGCCAACGTGAAAGAGTTAGACCTATCATCGAATAATTTCACAGTTATTCCTGAATGCATCAAACAATGCAACTTTTTGACTAGGCTTTATTTGGATAATTGTGAGCGTCTTCAAGAAATTAGAGGGATTCCTCCAAACTTGAAACATTTCTCTGCAATAAAATGCCTATCCTTGACTTCCTCATGTAGAAGCATGTTCCTGAGTCAGGAACTGCATGAAGCTGGGAACACAGTGTTTTATTTACCAGGAGCTAAGATTCCAGAGTGGTTTGAGTGTCAAAGAAAGGGACCATCAATTTCTTTTTGGTTCCGTAACAAATTCCCAGCCATAGCTATTTGTCTTGTTATAGGACCAGTGGGCAAGTATTCCTCTCCAGAAGATGGATATTTGTTTAGAGCCATCGTGACCATCAATGGCAATAAACATTTGTTTTTGTTTGAGGATTTGTGGATGGGAATGGATAATACATGTATTTTCGATCCTCAGGAGATGAAACTGGAAGATAATTTGGACGAAGAACTTTTGGAAAATGAATGGAACCATGCAGAGATTACATATGAAAATTTGACATCCGTCCCGATCCTTATAAAAAGTGGAATCCATGTATTGAAACGAGAAAATAGCATGGGGAGGGGAGATATTCAATTCACTGATCCTTGTGGAAAAAGAAATTTGCATGATCATCACCACAACTCAGAATCACAAAATCCACAGTTGCTGGAGAAACATAGATTAATGGACATGGATGGTTTTGAGACACAATTTGTACAGAAGCAACAAGGCATGGGTATTTTCTCGCGCATGTGGAATTGGGCACTTAATGGTTTGACAGCTGTAACTACCAGACTATTACAGTCGGTCTAA 3258 0.3818 MAMQSSLSSYGFTYDVFLSFRGKDTRYGFTGNLYNALRDKGIHTFIDDKGLRRGDKITLALEKAIQESRIFIIVLSQNYASSSFCLNELAYILKLVKGKGLLVLPVFYYVDPSDARHHRGSFGEALANYEKKFNVNKGFQHNTKKLEEWKMAMHQAANLSGYHFKQGVKYEFEFIKEIVELVSSKINRAPLHVADYPVGLESQVLRVKLLLDIGSDDVVHMVGIHGLGGVGKTTLAVAVCNSIADHFEALCFLENVRETAGKHGLQHVQSNLLSEVVGEKEIKLTSVKQGISIIQHRLQQKKVLLIVDDVDKMEQLHAIVGRSDWFGHGSRIIVTTRDKQLLACHGVKRTYELKELNKEHALQLLCWKAFKLEYFDPCYHDVLNRAITYVSGLPLALEVIGSNLFGKSIEQWECALNRYERIPNKEIQEILRVSYDALDEDEQSVFLDIACCYKEYELAEVEDILHAHYDHCMKHQIGVLVQKSLIKITFDGKVTLHDLIEDMGKEIVRQESPKEPGKRSRLWFSKDIVEVLQENKGTSQTEIIFMDFSLFEKVEWDGYAFKRMKNLKTLIIRSGHFSKGPKHLPNILRVLEWWRYPSQDLPFDFHPKKLVICKLPKSSFSSLELAAILLKKMFVNLTSLNFDKCQCLTQIPDLSCLPQLEKLSFQLCQNLFTVHYSVGFLEKLKILNGLGCIKLKSFPPIKLTSLEQLELSFCIGLKRFPEILGKMENITPNGLEETRIKKISLSFKNLTQLQQLYVMRGVSAKRVSSTTVFSNVQRLRLRSCNLSDDFFPTVIPWFANVKELDLSSNNFTVIPECIKQCNFLTRLYLDNCERLQEIRGIPPNLKHFSAIKCLSLTSSCRSMFLSQELHEAGNTVFYLPGAKIPEWFECQRKGPSISFWFRNKFPAIAICLVIGPVGKYSSPEDGYLFRAIVTINGNKHLFLFEDLWMGMDNTCIFDPQEMKLEDNLDEELLENEWNHAEITYENLTSVPILIKSGIHVLKRENSMGRGDIQFTDPCGKRNLHDHHHNSESQNPQLLEKHRLMDMDGFETQFVQKQQGMGIFSRMWNWALNGLTAVTTRLLQSV 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01041 1085 SMART till_3 13 159 IPR000157 GO:0007165
Cca08g01041 1085 Gene3D Ribonuclease Inhibitor 555 733 IPR032675 -
Cca08g01041 1085 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 974 IPR044974 GO:0006952
Cca08g01041 1085 SUPERFAMILY "Winged helix" DNA-binding domain 425 533 IPR036390 -
Cca08g01041 1085 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 162 IPR035897 -
Cca08g01041 1085 Pfam NB-ARC domain 207 438 IPR002182 GO:0043531
Cca08g01041 1085 Gene3D Ribonuclease Inhibitor 738 904 IPR032675 -
Cca08g01041 1085 ProSiteProfiles TIR domain profile. 12 186 IPR000157 GO:0007165
Cca08g01041 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 449 IPR027417 -
Cca08g01041 1085 CDD AAA 198 338 - -
Cca08g01041 1085 PRINTS Disease resistance protein signature 221 236 - -
Cca08g01041 1085 PRINTS Disease resistance protein signature 297 311 - -
Cca08g01041 1085 PRINTS Disease resistance protein signature 390 404 - -
Cca08g01041 1085 PRINTS Disease resistance protein signature 701 717 - -
Cca08g01041 1085 PANTHER NB-ARC DOMAIN PROTEIN 18 974 - -
Cca08g01041 1085 SUPERFAMILY L domain-like 509 872 - -
Cca08g01041 1085 Gene3D - 13 184 IPR035897 -
Cca08g01041 1085 Pfam TIR domain 14 188 IPR000157 GO:0007165
Cca08g01041 1085 Gene3D - 355 439 IPR042197 -
Cca08g01041 1085 Gene3D - 185 348 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01041 Cca-Chr8 26492381 26496632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01041 64 834 WRKY Transcription Factor Family AT4G12020 30.348 2.33e-71 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01041 - - gmx:100784366 1409.43