Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01040 ATGCTTCCAACTCTGAGCATTCCGTGGGCGGAACAAGCGGGGTTCGAAAACGACGTCGTCATGGGGGAGGCTGTTTTTCCTTCCTTCAAGTCCATGCTGGACGGTGACTGGTACCTAAACTCCGAAGCGAACAATCTCCAAAACGACGCGTTTCAGATGCACTCGCTGGACTCCTCCTCTTCCGTGCAACCCAAACCCTGCTTCGGCTCTTTCTTCGACCCTTTCGACAATGCCTTCGATGTGGGACCCCAGTGCGGATTCCTCGACCTGAGTTCGAACCCCGAGTTCGCGCCGAGTCAACTCGGCGCCGGGTTGGCTCGGGAAGAGGCGTTTGACGCGCTGGCTTTGGGCAAGGCCAGCGCGCTCAGGCCTCTCGCCGCGCTGCCTCCGCCCACTCTGTTTTGGAAGCGGGCGGAGCGGTGGCGAGAGGTCCGGAAGTTGAGGGAATTGGTGGTGCCGGTGCCGGTGCCGCCGCGGTTTGCGGCGGCAACggcggtggggaggagaaggaagagggaggaggatgaggggggagTGAATTATGAGGGGAATGAGGTTGTGAAGTTGGAGAGTGGTTTTGATGCAAATAATGATGATGGgaatgagaatgagaatgagaatgagaatgagaacgagaatgGTGGCGATGGTGGAGGCCAGAAGGGGAAGAAGAAGAAGGGGGTGCCGGCGAAGAATCTGATGGCTGAGAGGAGGCGGAGGAAGAAGCTCAATGATAGGTTGTACATGCTTAGGTCAGTTGTGCCCAAGATTAGCAAGATGGACAGAGCTTCGATACTCGGTGATGCCATTGACTACTTGAAGGAGTTACTACACCGGATTAATGATCTTCATATTGAACTGGAGTCAAGCTCGCCTGGCTCATCCCTTCCACCTTCTGCTAGCTTCCACCCTGTGACACCCACTCCATCTACCGTTCCACCCTCTGCAAGCTTCCACCCTGTGACGCCCACTCCGCCTACCCTTCCCTGCAGGGTGAAGGAAGAACCATGTCCCACCTCTTTGCCATGTCCTAATAGCCAATCAGCAAAGGTGGAGGTTAGGGTGAGGGAAGGGAGAGCTGTCAATATCCATATGCTTTGTGCCCGCAGACCAGGGCTTTTACTTTCTACCATGAGGGCATTGGATAACCTTGGATTGGATGTTCAGCAGGCTGTTATCAGCTGTTTCCATGGTTTTGCTTTAGATCAATGCCGTGAAGACCAGGATGTCCTCCCGGAGCAAATTAAAGCAGTACTGTTGGACACAGCAGATTTCCATGCATGCAGTTTTTAA 1293 0.5089 MLPTLSIPWAEQAGFENDVVMGEAVFPSFKSMLDGDWYLNSEANNLQNDAFQMHSLDSSSSVQPKPCFGSFFDPFDNAFDVGPQCGFLDLSSNPEFAPSQLGAGLAREEAFDALALGKASALRPLAALPPPTLFWKRAERWREVRKLRELVVPVPVPPRFAAATAVGRRRKREEDEGGVNYEGNEVVKLESGFDANNDDGNENENENENENENGGDGGGQKGKKKKGVPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLHRINDLHIELESSSPGSSLPPSASFHPVTPTPSTVPPSASFHPVTPTPPTLPCRVKEEPCPTSLPCPNSQSAKVEVRVREGRAVNIHMLCARRPGLLLSTMRALDNLGLDVQQAVISCFHGFALDQCREDQDVLPEQIKAVLLDTADFHACSF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01040 430 Pfam Helix-loop-helix DNA-binding domain 234 276 IPR011598 GO:0046983
Cca08g01040 430 MobiDBLite consensus disorder prediction 289 320 - -
Cca08g01040 430 MobiDBLite consensus disorder prediction 163 240 - -
Cca08g01040 430 CDD bHLH_AtAMS_like 230 288 - -
Cca08g01040 430 PANTHER BHLH TRANSCRIPTIONAL FACTOR 310 428 - -
Cca08g01040 430 MobiDBLite consensus disorder prediction 166 181 - -
Cca08g01040 430 MobiDBLite consensus disorder prediction 217 240 - -
Cca08g01040 430 PANTHER BHLH TRANSCRIPTIONAL FACTOR 84 313 - -
Cca08g01040 430 Gene3D - 220 291 IPR036638 GO:0046983
Cca08g01040 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 227 276 IPR011598 GO:0046983
Cca08g01040 430 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 310 428 - -
Cca08g01040 430 SMART finulus 233 282 IPR011598 GO:0046983
Cca08g01040 430 MobiDBLite consensus disorder prediction 302 320 - -
Cca08g01040 430 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 84 313 - -
Cca08g01040 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 294 IPR036638 GO:0046983
Cca08g01040 430 MobiDBLite consensus disorder prediction 197 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01040 Cca-Chr8 26424557 26428760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01040 73 417 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 49.744 7.04e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca08g01040 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01040 - - gsj:114390091 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00754 07 11720342 11724385 Cca08g01040 08 26424557 26428760 PCT