Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01029 ATGGTTCTTCAGAATGATATTGATTTGCTGAACCCTCCAGCTGAGTTGGAGAAGAGAAAGCACAAGCTTAAGCGTCTTGTTCAGTCTCCAAATTCTTTCTTCATGGATGTGAAGTGTCAGGGTTGCTTCAACATAACAACTGTGTTTAGCCACTCTCAAACAGTTGTGGTATGCGGTAACTGCCAGACTGTGTTGTGCCAACCAACGGGTGGACGGGCGAGGTTAACTGAAGGTCATGACTTCCACAAGATCAGCCATTCCTCAACTGAGTTAGTTGCCTTGGTGCTTGCCTATCCTAGTAGCCAAAATAGCTCCAAGATTAGGGGACTTAGATTTAGTAACAACCAGCCCTGGAGGCAAAGTGGTAGTGGTTGA 375 0.4587 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGHDFHKISHSSTELVALVLAYPSSQNSSKIRGLRFSNNQPWRQSGSG 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01029 124 MobiDBLite consensus disorder prediction 102 124 - -
Cca08g01029 124 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 2 83 - -
Cca08g01029 124 Hamap 30S ribosomal protein S27e [rps27e]. 24 95 IPR000592 GO:0003735|GO:0005840|GO:0006412
Cca08g01029 124 SUPERFAMILY Zn-binding ribosomal proteins 30 81 IPR011332 GO:0006412
Cca08g01029 124 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
Cca08g01029 124 Gene3D - 6 84 IPR023407 -
Cca08g01029 124 PANTHER 40S RIBOSOMAL PROTEIN S27 2 83 IPR000592 GO:0003735|GO:0005840|GO:0006412
Cca08g01029 124 Pfam Ribosomal protein S27 30 81 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01029 Cca-Chr8 26075966 26077883 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01029 1 83 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 91.566 1.04e-54 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01029 K02978 - minc:123230388 162.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00754 05 20831285 20832401 Cca08g01029 08 26075966 26077883 PCT