Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01025 ATGAATCCCTACACATCATCACCATCGTCCTCCAAATCCAAGAAGAAGCAAACGACAACGCAACAAGATCAGCAGCAACACGAAACGGCATGGGGAGGGAGGTACCTCGGCGTGAGGAGGAGGCCGTGGGGAAGGTACGCGGCAGAAATCCGTGACCCTTCCACCAAGGAAAGACATTGGTTGGGCACGTTTGACACGGCAGAAGAAGCCGCCCTGGCATACGACAGGGCGGCTCGCTCCATGCGTGGATCACGTGCCCGAACCAACTTCGTCTACCCGGATACCCCGCCGGGTTCCTCGGTCACCTCCATTATCTCACCGGACGAAcaaacccaaacccaaatccaaatccaaatccaTCAAGCCCAAGAAGAGCTCTCCTCTCTATTTGCCCCGAACCCGTTTCCACAACCCGACCCGACCCCACCATTTTCCTTGGGCGGGTACCCGGGGATCACGAACGCGAACACTCCTACATTTTCTGCCACCGAAGTTGCGTCATCCGGTGGCTATAGCTATAGTTATGGTTATAATGAAGGAGTAACCAACGTGGATGGTTCACATTTTAAGCTCTTTGATGACGGTGAAACGCAGCTTCCTCCTTTGCCACCGGATATCACAAGCTCCATGGGCTATGAAATGGGTCACGGGTTTTACGGAGATGGAGTCGGGTTTTCGGATCCAAGTTTTAATGTGGATGCTTCCGGGCCGGGTTACCCGTATTCGGGTTTTGAATCGGGTGATTACGTGGTGCATAGTCCACTCTTTGGCGCAATGCCACCAGTCTCGGATAATGTGGCAACGGGTCATGAAGGTTTTGATTTGGGTAGCTCTTCGTATTTCTTCTGA 849 0.5135 MNPYTSSPSSSKSKKKQTTTQQDQQQHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPPGSSVTSIISPDEQTQTQIQIQIHQAQEELSSLFAPNPFPQPDPTPPFSLGGYPGITNANTPTFSATEVASSGGYSYSYGYNEGVTNVDGSHFKLFDDGETQLPPLPPDITSSMGYEMGHGFYGDGVGFSDPSFNVDASGPGYPYSGFESGDYVVHSPLFGAMPPVSDNVATGHEGFDLGSSSYFF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01025 282 MobiDBLite consensus disorder prediction 1 35 - -
Cca08g01025 282 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 282 - -
Cca08g01025 282 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Cca08g01025 282 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Cca08g01025 282 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Cca08g01025 282 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Cca08g01025 282 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Cca08g01025 282 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Cca08g01025 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF087 5 282 - -
Cca08g01025 282 CDD AP2 34 90 IPR001471 GO:0003700|GO:0006355
Cca08g01025 282 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Cca08g01025 282 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01025 Cca-Chr8 26010813 26011757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01025 9 273 AP2-EREBP Transcription Factor Family AT5G13910 41.758 2.54e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g01025 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01025 K09286 - gmx:100809600 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00722 07 11011819 11012817 Cca08g01025 08 26010813 26011757 PCT