Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01019 ATGACTGATTCTCACGCCAATCACAATGACCCATCTCTCGCTACCGATGCTGATGCACCCAATGATGCTGGAAATGATGATGTCAAGTTGAGTTCTAGGGACCAAAGACTGGCTCTGCCAGGTGAGCCCAAGTGTGTTATATGTGGCCGCTACGGTGAATACATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAATGCAAACAAGCACTGCTCTGCAGAATGGCCAAATCGTCGTCTTCTATTGGAGGTCTTCCACCGCCTAGAAAGATTCCTGCAGCTGATGAGTGCTTTTATGTTAGAGGTACCGATTATGAATCGGGAACTCCATCAATGGCTAGTGATCAGGTTGAAATAATTAGAAAGAAACTTAACATTCATGTGAAGGGTAATGATGTAGTGACACCAGTTTTGTCATTCTCTGCCTGTAACCTCCCTGACAAGCTTCTCCACAATATAGAAGCAGCAGGATATGACATGCCTACACCTGTCCAGATGCAAGCAATACCTGCTGCTTTGACAGGCAAAAACATGCTCGTTTTGGCTGATACAGGATCTGGGAAGTCTGCTTCGTTTCTCATTCCAATAGTTTCTCGTTGTGCGAGTCATCGTTGGCAATATGTTTCAGATAAGAAGCCTCTAGCTATGGTGTTAACACCTACCAGAGAGCTCTGTATACAGGTTGAAGAACATGCTAAATTGCTTGGAAAGGGGTTGCCTTTCAAAACTGCTCTTGTGGTTGGCGGTGAGGCCATGGCTGGACAACTTCACCGCATTCAACAAGGGGTCGAATTGATAGTAGGAACCCCAGGAAGGCTTGTTGATCTTTTAATGAAGCATGAGATTGACTTAGATGATGTGATGACTTTCGTTGTGGATGAGGTGGACTGCATGCTGCAAAGGGGCTTTAGAGATCAGGTCATGCAAATATATAGGGCCCTGTCACAACCTCAGGTCTTGATGTATTCTGCTACAATGTCTAATGATTTAGAGAAGATGATTAACTCTCTGGCGCAAGGTACAGTGGTTATCTCTGTTGGAGAGCCTAATAGACCAAATAAGGCCGTGAAGCAGCTAGCTATCTGGGTTGAGTCAAAGCAAAAGAAGCAGAAGCTGTTTGACATTTTGGCAAGTAAGAAGCATTTTACGCCACCTGTTGTAGTATATGTCGGCTCTAGACTTGGGGCAGATCTCCTGGCTAATGCAATTACAGTGTCCACAGGAATTAAAGCAGTTTCAATTCATGGGGAGAAGTCTATGAAGGAAAGAAGAGAAATAATGCAGTCCTTTTTGGTGGGTGAGGTCCCAGTGGTTGTGGCTACTGGGATTTTGGGTAGGGGGGTTGATCTACTGGGAGTAAGACAGGTAATTGTGTTTGACATGCCTAATTCCATTAAGGAATATGTTCATCAGATTGGAAGGGCATCTAGAATGGGAGAGGAAGGTCAAGGCATAGTTTTTGTGAATGAGGAAAATAAGAATGTCTTTGCAGAATTAATTGATGTTCTGAAATCTGGTGGAGCAGCGGTGCCTCGGGAGCTTGCCAATTCACGGTATGCCACAGGATTTTTCTCTACTGGCAAGGGTTCAAAGAAGAGAAAGCATACAGGATGA 1617 0.4434 MTDSHANHNDPSLATDADAPNDAGNDDVKLSSRDQRLALPGEPKCVICGRYGEYICDETDDDVCSLECKQALLCRMAKSSSSIGGLPPPRKIPAADECFYVRGTDYESGTPSMASDQVEIIRKKLNIHVKGNDVVTPVLSFSACNLPDKLLHNIEAAGYDMPTPVQMQAIPAALTGKNMLVLADTGSGKSASFLIPIVSRCASHRWQYVSDKKPLAMVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGEAMAGQLHRIQQGVELIVGTPGRLVDLLMKHEIDLDDVMTFVVDEVDCMLQRGFRDQVMQIYRALSQPQVLMYSATMSNDLEKMINSLAQGTVVISVGEPNRPNKAVKQLAIWVESKQKKQKLFDILASKKHFTPPVVVYVGSRLGADLLANAITVSTGIKAVSIHGEKSMKERREIMQSFLVGEVPVVVATGILGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQGIVFVNEENKNVFAELIDVLKSGGAAVPRELANSRYATGFFSTGKGSKKRKHTG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01019 538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 170 345 IPR014001 -
Cca08g01019 538 Gene3D - 24 82 - -
Cca08g01019 538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 519 IPR001650 -
Cca08g01019 538 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 25 520 - -
Cca08g01019 538 SMART helicmild6 398 480 IPR001650 -
Cca08g01019 538 SMART ultradead3 158 360 IPR014001 -
Cca08g01019 538 Pfam Helicase conserved C-terminal domain 371 480 IPR001650 -
Cca08g01019 538 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 25 520 - -
Cca08g01019 538 Pfam HIT zinc finger 43 69 IPR007529 -
Cca08g01019 538 CDD SF2_C_DEAD 357 489 - -
Cca08g01019 538 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 139 167 IPR014014 GO:0003724
Cca08g01019 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 347 IPR027417 -
Cca08g01019 538 Gene3D - 106 349 IPR027417 -
Cca08g01019 538 Gene3D - 351 536 IPR027417 -
Cca08g01019 538 Pfam DEAD/DEAH box helicase 163 333 IPR011545 GO:0003676|GO:0005524
Cca08g01019 538 MobiDBLite consensus disorder prediction 1 34 - -
Cca08g01019 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 494 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01019 Cca-Chr8 25276009 25278516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01019 140 500 Eukaryotic Initiation Factors Gene Family AT1G72730 32.240 4.92e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01019 K19466 - gmx:100781473 939.873