Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01017 ATGGCTGATAGTCAAGATTCAGACAAGAACATTGAAATATGGAAGATCAAGAAATTGATCAAGGCACTGGAAGCTGCTAGAGGTAATGGTACCAGCATGATTTCTCTGATAATGCCTCCACGTGATCAAATATCCCGGGTCACCAAAATGTTGGGAGATGAATTTGGAACAGCTTCAAACATCAAAAGTAGGGTGAACCGACAGTCAGTATTGGGAGCCATTACCTCTGCGCAGCAGAGGTTGAAACTATATAATAAGGTTCCTCCAAATGGTTTGGTTCTTTACACTGGAACCATTGTCACTGAAGATGGCAAGGAAAAGAAAGTGACATTTGATTTTGAGCCTTTCAAGCCTATCAATGCATCACTCTACCTCTGTGATAACAAGTTTCACACAGAGGCTCTAAATGAACTTTTGGAATCTGATGACAAGTTTGGGTTCATTGTTATGGATGGAAATGGCACCCTTTTCGGGACATTAAGTGGAAACACTCGTGAGGTGCTTCACAAATTTACTGTTGACCTTCCAAAGAAGCACGGCAGAGGAGGTCAATCAGCTTTGCGTTTTGCTCGTCTTAGGATGGAAAAGAGGCACAACTATGTTAGAAAAACAGCAGAACTTGCTACTCAGTTTTTCATCAATCCTGCCACTAGTCAACCTAATGTTTCTGGACTTATACTTGCTGGTTCTGCTGACTTCAAGACTGAGCTCAGTCAGTCAGATATGTTCGACCCTCGGTTGCAAGCGAAAATACTGAATGTGGTAGATGTTTCTTATGGTGGGGAAAATGGATTTAACCAAGCTATTGAGTTATCTGCAGAGATTTTATCTAATGTGAAGTTCATTCAAGAGAAAAAGTTGATAGGGAAATATTTTGAAGAGATCAGCCAGGACACTGGGAAATATGTGTTTGGGGTTGATGACACTCTCAAGGCACTGGAGATGGGTGCTGTGGAAATACTCATTGTTTGGGAAAATTTGGATATTAATAGGTATGTGCTGAAAAATACTACCACTGGTGAGATTGTCATAAAGCACTTGAGCAAGGAACAAGAGACTAATCAGAGCAACTTCCGCGATTTGGCGACTTCTGCAGAGTTGGAAGTTCAGGAGAAGATGCCGTTGCTGGAGTGGTTTGCCAATGAGTACAAACGATTTGGATGCTCCCTTGAATTTGTGACCAACAAATCTCAAGAAGGGTCACAATTCTGCAGAGGCTTTGGTGGCATTGGTGGAATTCTTCGTTACCAGCTTGACATCAGATCTTTTGATGAGTTATCCGATGATGGAGAAGTGTATGGTGATTCTGACTAA 1314 0.417 MADSQDSDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTFDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVLKNTTTGEIVIKHLSKEQETNQSNFRDLATSAELEVQEKMPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDDGEVYGDSD 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01017 437 SMART eRF1_1_2 4 140 IPR005140 -
Cca08g01017 437 Gene3D eRF1 domain 2 136 277 IPR042226 -
Cca08g01017 437 SUPERFAMILY Translational machinery components 142 276 - -
Cca08g01017 437 SUPERFAMILY L30e-like 278 420 IPR029064 -
Cca08g01017 437 Pfam eRF1 domain 2 144 277 IPR005141 -
Cca08g01017 437 Gene3D eRF1 domain 1 1 135 IPR024049 -
Cca08g01017 437 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 437 - -
Cca08g01017 437 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 12 417 IPR004403 GO:0003747|GO:0006415
Cca08g01017 437 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 7 140 IPR024049 -
Cca08g01017 437 Pfam eRF1 domain 1 18 138 IPR005140 -
Cca08g01017 437 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 437 IPR004403 GO:0003747|GO:0006415
Cca08g01017 437 Pfam eRF1 domain 3 281 418 IPR005142 -
Cca08g01017 437 Gene3D - 279 437 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01017 Cca-Chr8 25193281 25198255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01017 1 437 Eukaryotic Initiation Factors Gene Family AT3G26618 92.677 0.0 834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01017 K03265 - gmx:100786788 828.165