Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01011 ATGGGAACCTCAAATGACCATGATGCTCCTCCTTCGACTCTACTTCAAGACCTTAATGTGACGGTCCAAAAATCCTCCATGGTTTTTCCCTCGAAAGAGATTGAGAGAAAGTCCTTGTTCTTGTCAAACATAGACAAGGTTCTCACCTTTGACGTGGAAACGGTTCACTTCTTTGGTGCCCACAAAGACTTCCCTCCCCACGTTGTGGCTGAGAAGTTGAAGAGTGCCCTAGAGGATGCCCTTGTGGTTTATGACTTCTTGGGTGGAAGATTGAAGGTGAACAATGATACCAAAAGATTAGAGATGGATTGTAACCCTGAGGGAGCAGGGTTCGTGGTGGCTTCCAGTGGGTACAGATTGGATCAAATTGGGGATTTGGATTATCCAAATCCAGCTTTTGCACAATTGGTTCATAAGAATAAGGATTTTCTTAAACAGGGTGATGTCCCACTTTGTGTTGCCCAGGTGACATCCTTCAAGTGTGGTGGGTTCGCAATGGGCATCTCCACCAGCCACACCACCTTCGACGGCCTCAGCTTCAAAACCTTCCTCGACAACCTCGCCGCACTCGCCGCTAACAAGCCCCTGCCTGTCACCCCCTGCCACGACAGGCACCTGCTGGCCGCCCGATCTCCGCCACGTGTCACCTTCCCACACCCCGAGATGCTCCCCATCTCTAGCCACCTCCCACATTCCCCCGAGTCCACCAACATCTTCGACGCCTCCACCGAACCCCTCCACTTCAACGTCTTCAAACTCACCTCATCCCATATCACAAAACTCAAGCAAGAGGCCACGTGCGGGACCACACGTGTCACGGGCTTCAATGCCATCACAGCTCACATATGGCGATGCAAGGCCCTATCCGCCGATGATAACCCTAACAGGTCGTCCACTATACTGTATGCTGTGGACATACGCTCAAGGCTGAACCCTCCGTTGCCGAAGTCATACACGGGAAACGCGGTTTTGACGGCGTACGCGACTGCCACGTGTCAGGAGCTGGAGGAAGGACCCTTCATGAAGGTGGTTGAGATGGTGCgcgagggcgcggcgagggtgacggacgagtacgcgaggtcgaTCATCGATTGGGGACAGGTGAACGAAGGGTTTCCAAATGGGGATGTTTTGGTGTCTTCGTGGTGGAGATTAGGGTTTGAGGAGGTGGAGTACCCGTGGGGGAAGCCCAGGTATTGTTGTCCTGTGGTGTATCATAGGAAGGATATTGTTTTGTTGTTTCCTCCGGTTGGTGGGGGTGATGGGGTGAGTATTATTGTGGCTCTTCCTCCCAAGGAAATGGAAAAGTTTCATGGGCTCTTCTACAAGTTCTTGCGTTGA 1341 0.5004 MGTSNDHDAPPSTLLQDLNVTVQKSSMVFPSKEIERKSLFLSNIDKVLTFDVETVHFFGAHKDFPPHVVAEKLKSALEDALVVYDFLGGRLKVNNDTKRLEMDCNPEGAGFVVASSGYRLDQIGDLDYPNPAFAQLVHKNKDFLKQGDVPLCVAQVTSFKCGGFAMGISTSHTTFDGLSFKTFLDNLAALAANKPLPVTPCHDRHLLAARSPPRVTFPHPEMLPISSHLPHSPESTNIFDASTEPLHFNVFKLTSSHITKLKQEATCGTTRVTGFNAITAHIWRCKALSADDNPNRSSTILYAVDIRSRLNPPLPKSYTGNAVLTAYATATCQELEEGPFMKVVEMVREGAARVTDEYARSIIDWGQVNEGFPNGDVLVSSWWRLGFEEVEYPWGKPRYCCPVVYHRKDIVLLFPPVGGGDGVSIIVALPPKEMEKFHGLFYKFLR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01011 446 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 16 444 - -
Cca08g01011 446 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 16 444 - -
Cca08g01011 446 Pfam Transferase family 19 438 - -
Cca08g01011 446 Gene3D - 232 444 IPR023213 -
Cca08g01011 446 Gene3D - 16 224 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01011 Cca-Chr8 24757895 24764651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01011 18 445 Monolignol Biosynthesis Gene Families AT5G48930 30.942 1.24e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01011 K13065 - gmx:100305576 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00702 07 10543339 10543971 Cca08g01011 08 24757895 24764651 PCT