Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01007 ATGAACGACCTAATGACCAAGTCCTTCACCAGCTACGTGGACCTAAAGAAAGCGGCGATGAAGGACGTGGATTTGGAGGCCGGTGTGGATCAAAACCAAAACCCTAATGTGGAATTAACCTCTTCCACGGCCCATTTAGACACCGACATGGGCCGGTTCCTGGAGGAGGCGGAGAAGGTGAAGGCCCAGATGGGGGCCCTCCGCGACATCCTTGGGAGGCTCCAGCAGGCCAACGAGGAGAGCAAGGCCCTGCACAAGCCCGACGCCCTCAAGGCCCTGCAGGGCCGGATCAACGGTGACATTGTCGCCGTTCTCAAGAAGGCCAGGGCGATCCGGGCCCAGCTCGAGGAGATGGACCGTGCCAATGCCGCCAACCGGAGGCTCTCCGGCCTCAAGGATGGCTCGCCGGCCATCTACCGGACCCGGATCGCCGTCACCAACGGGCTCCGCAAGAAGCTCAAGGAGCTCATGATGGAGTTCCAGGGCCTGAGGCAGAGGATGATGAGTGAGTACAAGGACACTGTAGGGAGAAGGTACTTTACTGTGACTGGGGAGTACCCAGATGAGGAGGTGATTGAGAAGATCATCGCCAATGGGAACGAGGAAGAGGTTTTGGGTAAGGCCATACAGGAGCATGGTAGAGGGAAGGTTCTGGAAACTGTGGTGGAGATTCAGGACAGGCATGATGCTGCTAAGGAAGTAGAGAAGAGTTTGCTGGAGCTGCATCAGGTGTTTCTGGACATGGCTGTGATGGTTGAGGCACAGGGTGAGAAAATGGATGATATTGAACATCACGTGTTGCACGCTTCGCATTATGTTAAGGATGGGACCAAGAGTCTCCAGGGTGCCAAGGAGTACCAGAGGAGTAGCAGGAAGTGGATGTGTATTGGGATCATACTGCTTCTCATTCTTATTCTGCTTGTTATTATCCCTGTTGCTACCAGTTTCAGCAGTTCTTGA 960 0.5479 MNDLMTKSFTSYVDLKKAAMKDVDLEAGVDQNQNPNVELTSSTAHLDTDMGRFLEEAEKVKAQMGALRDILGRLQQANEESKALHKPDALKALQGRINGDIVAVLKKARAIRAQLEEMDRANAANRRLSGLKDGSPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKDTVGRRYFTVTGEYPDEEVIEKIIANGNEEEVLGKAIQEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKSLQGAKEYQRSSRKWMCIGIILLLILILLVIIPVATSFSSS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01007 319 Pfam Syntaxin 53 256 IPR006011 GO:0016020
Cca08g01007 319 ProSitePatterns Syntaxin / epimorphin family signature. 227 267 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cca08g01007 319 Coils Coil 146 166 - -
Cca08g01007 319 Pfam SNARE domain 258 309 IPR000727 -
Cca08g01007 319 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 5 312 - -
Cca08g01007 319 CDD SNARE_syntaxin1-like 220 281 - -
Cca08g01007 319 SMART SynN_4 45 172 IPR006011 GO:0016020
Cca08g01007 319 Gene3D - 46 175 - -
Cca08g01007 319 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 221 283 IPR000727 -
Cca08g01007 319 Gene3D - 217 316 - -
Cca08g01007 319 SUPERFAMILY t-snare proteins 48 276 IPR010989 GO:0016020|GO:0016192
Cca08g01007 319 CDD SynN 50 208 IPR006011 GO:0016020
Cca08g01007 319 PANTHER SYNTAXIN 5 312 IPR045242 -
Cca08g01007 319 SMART tSNARE_6 216 283 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01007 Cca-Chr8 24512319 24514508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01007 1 319 SNARE and Associated Proteins AT1G08560 65.109 1.38e-135 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01007 K08486 - gmx:100816016 546.199