Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01004 ATGGGAACCCCACAAGCCAATAACTTGCCTCCAGGGTTTAGGTTCCACCCCACAGATGAAGAGCTCATTCTCCACTATCTTAGGAAGAAGGTGGCCTCTATACCTTTGCCGGTTTCAATCATTGCTGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAGCTAAGGCTGCGTTTGGGGAGAAGGAGTGGTACTTCTTCAGCCCTAGAGACAGGAAGTACCCAAATGGAGCTCGGCCAAACAGGGCAGCTGGTTCAGGGTACTGGAAGGCTACGGGCACTGATAAGAACATCGTGGCATCATTAGTAAGAGGAGGAGTGAGAGAACACTTTGGTGTGAAGAAGGCTTTGGTGTTCTACGAAGGAAAACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAGTATCGTCTTGTTCACTCTAACAGACCCATTAGCCTCAAAGAAACCTCCATGAGGTTGGATGATTGGGTTCTATGTCGGATATACAAGAAGTCCAAACAAGTTGCATCTTCAGCCACAGAAGCAGCAACAGTGCAAGTGAATGAGCAAGATGAAGCAAAAGAAGATGAGAATAAAACCAAAGCACCAATCTCCAAGATTAGTACTCTTGTCCCTCTTCCACCACTCATGTCTCAGAAATCTTTGTCCTTCTCCAACCTCTTGGATGCCACAGACTACTCCATGCTCAGCACCATCTTATCTGAAAATTACCACTATTCCAATTACACAACTCCAAGTGATGAAGGCCTATTCAATTGTGAGAATCTGGATCATGAAACCCCCCAAAACCAAAACTACTATTGCAACAATAACAATAGTAATAGCAGCTACTTGTTTCAGAAGAACCCTTCAGTGCTTCCCCACATGGAAAACATGACCAGACCCAAGCACCAGCTTTCAAACATAGATGAGGACATGGTGTACCCTTCAAAGAAATATCATAGCTCCTCTTGCAATTTCCCTAACACCAATCTCCAAAACCATAACCAACAAAGGAACTTCATGTTCAAGCAGCCATTCATTAGTCAGCAGTTACTTCTAGGTCCTCAATATCTTCCATTTCAGTGA 1077 0.4448 MGTPQANNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKNIVASLVRGGVREHFGVKKALVFYEGKPPKGVKTNWIMHEYRLVHSNRPISLKETSMRLDDWVLCRIYKKSKQVASSATEAATVQVNEQDEAKEDENKTKAPISKISTLVPLPPLMSQKSLSFSNLLDATDYSMLSTILSENYHYSNYTTPSDEGLFNCENLDHETPQNQNYYCNNNNSNSSYLFQKNPSVLPHMENMTRPKHQLSNIDEDMVYPSKKYHSSSCNFPNTNLQNHNQQRNFMFKQPFISQQLLLGPQYLPFQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01004 358 PANTHER NAC TRANSCRIPTION FACTOR 56 5 306 - -
Cca08g01004 358 SUPERFAMILY NAC domain 6 167 IPR036093 GO:0003677|GO:0006355
Cca08g01004 358 Pfam No apical meristem (NAM) protein 10 140 IPR003441 GO:0003677|GO:0006355
Cca08g01004 358 PANTHER OS01G0104200 PROTEIN 5 306 - -
Cca08g01004 358 ProSiteProfiles NAC domain profile. 9 167 IPR003441 GO:0003677|GO:0006355
Cca08g01004 358 Gene3D NAC domain 18 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01004 Cca-Chr8 24370536 24374329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01004 7 265 NAC Transcription Factor Family AT3G04070 56.679 1.42e-97 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca08g01004 NAM 8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01004 - - gmx:100817074 516.924