Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01001 ATGCTGAAGCGCTCCGGGCGCCCCCCGCCGCCGCCGGCGGAGTCCCTCTTCGACAGGATCTACCAGCTCCGGGGAGCCTTCCTGATGGTGGCCGTGCCTCTCCTTCTGGTGACCATGGTGCTCTACTTCACGCCCTCCGCCTCCTCCAACGAGTCCATCGAGGACTACGCCCTCACGCACCGCAAGGTCTCCCCCGATCGGAGGCCCTCCACCTCCTTCGCCGTCATCTTCGACGCCGGCAGCTCCGGCAGCCGCGTCCACGTCTTCCGCTTCGACCAGAACTTGGATCTCCTTCCCATTGGGAAGGACCTCGAGCTCTTCCTACAGATTAAGCCTGGTTTGAGTGCGTATGCACAGAATCCACAACAGGGAGCGGAATCTTTGATGTCTCTTTTGGATAAAGCGGAGAGTGTTGTTCCTCGGGAGTTTCGGCCAAAGACACCTGTTAGAGTTGGGGCAACTGCAGGTTTAAGGGCTTTGGGAGCGGATGCTTCTGACAAGATCTTGCAAGCGGTTCGGGATTTGCTTAAGCTAAGAAGCACTCTAAACTCTCAGCCTGATGCAGTAACTGTGCTGGATGGAACACAAGAAGGTGCTTTTCAATGGGTGACTATTAACTATCTACTGGGAAACTTGGGAAAAGATTATTCAGAAACTGTTGGGGTAGTTGATCTTGGAGGTGGATCTGTTCAGATGGCATATGCCATCTCTGAGACAGATGCTGCCAAGGCTCCAAAAGTATCAGTTGGAGAGGACCCATATGTCAAGGAGATGTTCCTAAGGGGAAGGAAATATTACCTCTATGTTCACAGTTACTTGGGCTATGGTTTACTAGCAGCTCGTGCAAAGATTTTAAAGGTTTTGGATGGTTCTGGAAACCCTTGCATCTTAGATGGCTTTGACGGATCTTACAATTATGGAGGAAAATCTTTTAAGGCCTCGTCCTCCCCTTCTGGCGCAAGCTTGAATGAATGCAAAAGCATAGCTCATAAGGCTCTCAAGGTTAATGGGTCAACATGTACACATATGAAGTGCACTTTTGATGGGATATGGAATGGTGGTGGGGGTGATGGACAGAAAAACCTTTTTGTTGCCTCATTTTTCTTTGACCGGGCAGCTGAGGCTGGTTTAGCCGATCCAAGCTTACCCGTTGTGAAGGTTCGTCCTACGGATTTTGAGGAAGCAGCTAAGCAAGCTTGTCAAACAAAACTTGAAGATGCCAAATCCACTTATCCAAGTGTGGAGGAAGGGAACCGTCCATATTTATGCATGGATCTCGTATACCAGTATACTTTGCTTCTTGTTGGATTCGGCCTAGATCCATGGCAAGAAATTACGTTAGTGAAGAAAGTTAAATATCATGATTATCTTGTTGAAGCTGCATGGCCCCTAGGCAGCGCTATAGAAGCTATTAAGCCTGGTTTGAGTGCGTATGCACAGAATCCACAACAGGGAGCGGAATCTTTGATGTCTCTTTTGGATAAAGCGGAGAGTGTTGTTCCTCGGGAGTTTCGGCCAAAGACACCTGTTAGAGTTGGGGCAACTGCAGGTTTAAGGGCTTTGGGAGCGGATGCTTCTGACAAGATCTTGCAAGCGGTTCGGGATTTGCTTAAGCTAAGAAGCACTCTAAACTCTCAGCCTGATGCAGTAACTGTGCTGGATGGAACACAAGAAGCTGACTTAGATCACATTGTTAATATTGTCCCTTGTTTAGCATTAGCATACTTGATTAGGAGTTCAGATAGTGTACAAATGATTTTGGGTGTGAACTGTGAAAGCATTGGGTCAAATGATCTCTGA 1800 0.4844 MLKRSGRPPPPPAESLFDRIYQLRGAFLMVAVPLLLVTMVLYFTPSASSNESIEDYALTHRKVSPDRRPSTSFAVIFDAGSSGSRVHVFRFDQNLDLLPIGKDLELFLQIKPGLSAYAQNPQQGAESLMSLLDKAESVVPREFRPKTPVRVGATAGLRALGADASDKILQAVRDLLKLRSTLNSQPDAVTVLDGTQEGAFQWVTINYLLGNLGKDYSETVGVVDLGGGSVQMAYAISETDAAKAPKVSVGEDPYVKEMFLRGRKYYLYVHSYLGYGLLAARAKILKVLDGSGNPCILDGFDGSYNYGGKSFKASSSPSGASLNECKSIAHKALKVNGSTCTHMKCTFDGIWNGGGGDGQKNLFVASFFFDRAAEAGLADPSLPVVKVRPTDFEEAAKQACQTKLEDAKSTYPSVEEGNRPYLCMDLVYQYTLLLVGFGLDPWQEITLVKKVKYHDYLVEAAWPLGSAIEAIKPGLSAYAQNPQQGAESLMSLLDKAESVVPREFRPKTPVRVGATAGLRALGADASDKILQAVRDLLKLRSTLNSQPDAVTVLDGTQEADLDHIVNIVPCLALAYLIRSSDSVQMILGVNCESIGSNDL 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01001 599 CDD NBD_sugar-kinase_HSP70_actin 75 234 - -
Cca08g01001 599 Gene3D Exopolyphosphatase. Domain 2 193 450 - -
Cca08g01001 599 Gene3D - 451 575 - -
Cca08g01001 599 PANTHER APYRASE-LIKE PROTEIN 2 471 - -
Cca08g01001 599 PANTHER APYRASE-LIKE PROTEIN 472 562 - -
Cca08g01001 599 Pfam GDA1/CD39 (nucleoside phosphatase) family 70 470 IPR000407 GO:0016787
Cca08g01001 599 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 192 207 IPR000407 GO:0016787
Cca08g01001 599 Gene3D - 59 192 - -
Cca08g01001 599 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 2 471 IPR000407 GO:0016787
Cca08g01001 599 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 472 562 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01001 Cca-Chr8 24239392 24254905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01001 463 586 Calmodulin-binding Proteins AT3G04080 55.303 4.28e-33 130