Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00996 ATGATGATGGAAGAGCCTGTTGTGGTTAACAAAGGAGATGAGCCTTTGGATTTGCCTCCAGGCTTCAGGTTCCACCCCACAGATGAAGAGATCATCACTTGTTACCTCACAGAGAAAGTGTTGAATAGAGGCTTCAGTGCAACCGCTATTGGTGAAGCTGATTTGAACAAGTGTGAGCCTTGGGACTTGCCAAAGAAGGCAAAGATGGGTGAGAAAGATTGGTATTTCTTTTGCCAAAGGGATAGGAAGTATCCAACAGGCATGAGGACCAATAGAGCGACTCAATCAGGGTATTGGAAGGCCACTGGTAAAGACAAAGAGATTTACAAAGGGAAGAGCAATCTTGTGGGGATGAAGAAGACCCTTGTGTTCTATAGAGGAAGAGCTCCAAAGGGAGAAAAGACAAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTCGCATGCTACAACCTCCCCAAGGTTGCAAAGGATGAATGGGTTGTGTGCAAGGTTTTCCACAAGGCCAACAACACAGATGCTAACAAAAGGATCCCCATTAGCCCTGGCCTTTTGAGAATGAACTCATTTGGAGAAGATCTATTTGATTTCTCTTCACTCCCACCTCTTGTGGATCCTCTCTTTGACCAAACCTCAAACAAGCACATTGACAATGATTTCAAGGGTAATACTAATACTATTACTAACACACCTTCATCATCAACTAAGCCACCACCATCAGAAGGTTATAACTACCATCCCAACTTCTTCATCAACAACAATCAGCACATGCTCATGATGAAGCCTGAAGATCACAGAACCTATGAGTTTCCCACCAACAACTATGGTCAAAATCCAATGGGAATAAGCATGAGCACAAGCACAAGCACTAGCAATACCCTTCAGAATTCAACCTCACCCTTCAACATGTTCCAAGATCATTACATGCACCAAGGCAAGAACAACAGTTCCAACTTCATTCCAGGGTTGGACAAACAGTGCAAGGTGGAGCAATTCTCCAACACTAACACCAACCAGCCTGTGGTCAGTGCCTCTCAAGACACGTGCCTCAGCAATGACAGAAACACTGACACTTCCTCGGTGGTTTCGAAGCAAGATATGGGAAGAAACAAAGCATTGTACGAGGATAATCTTGAAGGCCCATCATCGGTTGCTGCACTATCAGATTTGGAATGCCTGTGGGATGATTACTGA 1197 0.4419 MMMEEPVVVNKGDEPLDLPPGFRFHPTDEEIITCYLTEKVLNRGFSATAIGEADLNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIYKGKSNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFACYNLPKVAKDEWVVCKVFHKANNTDANKRIPISPGLLRMNSFGEDLFDFSSLPPLVDPLFDQTSNKHIDNDFKGNTNTITNTPSSSTKPPPSEGYNYHPNFFINNNQHMLMMKPEDHRTYEFPTNNYGQNPMGISMSTSTSTSNTLQNSTSPFNMFQDHYMHQGKNNSSNFIPGLDKQCKVEQFSNTNTNQPVVSASQDTCLSNDRNTDTSSVVSKQDMGRNKALYEDNLEGPSSVAALSDLECLWDDY 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00996 398 ProSiteProfiles NAC domain profile. 18 169 IPR003441 GO:0003677|GO:0006355
Cca08g00996 398 MobiDBLite consensus disorder prediction 219 241 - -
Cca08g00996 398 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 9 345 - -
Cca08g00996 398 Pfam No apical meristem (NAM) protein 19 144 IPR003441 GO:0003677|GO:0006355
Cca08g00996 398 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 345 - -
Cca08g00996 398 Gene3D NAC domain 27 174 IPR036093 GO:0003677|GO:0006355
Cca08g00996 398 MobiDBLite consensus disorder prediction 339 362 - -
Cca08g00996 398 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00996 Cca-Chr8 24091151 24093434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00996 1 209 NAC Transcription Factor Family AT5G18270 74.884 6.82e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca08g00996 NAM 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00996 - - gmx:100170716 587.8