Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00993 ATGCATGCTTTAAGGATGCACAACCCTACTGAGAGGCATATGATGATGCAAGGAGGCAATGGAACTGGTGATTCAGGACTTGTTCTTTCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAACGGTTCATAGAAGCAGTCAATCAACTTGGAGGAGCAGACAAAGCTACACCAAAAACAGTATTGAAACAGATGGGGATTCCTGGACTTACTCTCTACCATTTAAAGAGTCATCTACAGAGATTGCAATTCAAGTAG 270 0.4185 MHALRMHNPTERHMMMQGGNGTGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKQMGIPGLTLYHLKSHLQRLQFK 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00993 89 Pfam Myb-like DNA-binding domain 36 86 IPR001005 -
Cca08g00993 89 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 86 IPR044848 GO:0003700
Cca08g00993 89 Gene3D - 33 89 - -
Cca08g00993 89 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 86 - -
Cca08g00993 89 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 34 86 IPR006447 GO:0003677
Cca08g00993 89 SUPERFAMILY Homeodomain-like 33 86 IPR009057 -
Cca08g00993 89 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 89 IPR017930 -
Cca08g00993 89 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00993 Cca-Chr8 23980952 23981406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00993 13 88 G2-like Transcription Factor Family AT3G24120 63.158 1.01e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca08g00993 Myb_DNA-binding 2.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00993 - - ccaj:109790986 177.563