Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00989 ATGGAGAATGATATGGAGGGTGTGCATTGGTGCAACATATGCTTAAAAATGGTGAACCCAATGAATGATGCAGAGAACATGTGCCCATTTTGTGAGACAGAATTTTCTGAGGTAATGGACAACCTAAGGGACCAGAATGAGGTCATTGACTTAAGGTCAGCTTGGGTGTTCTCACTCTATGCCCCAATTTTTCTTGGTCTAATGGGTGCTTTCAGCCCTTCTCTTGCAAGAATTGCTCCACATGGAGGCAGCACCTCAAGGGGGGAGGAAGAGGTTGAGCAAGAGAGGGAGAATGAGCTTGTGCTGGGGAGAAGGAGAAGAACTTCAACCTACATGATGCACCTTTTTCGCGGTCTTCATGTGAGGATGGTGTCTGAATTTGAAAGCCTTGAGGAAACTAGGAGCATGGATAGTAGTAGTATCCTAGTGATTGATCCATTCAATGAGGGTGCATTGATTGTGAGAGGGCCTAACTTGAACCACACAAGTAGTCCAAGTGAGAGCACGGCTGTTGGAAGCTCCTTGAATGACCTTGTGGTGGGATCTGGGTTTGATATGCTGCTGCAGCATTTGGCACAGATTGGCCCTGGAGGGTATGCAAGTGTTAACCCTCCAGCGCAGAAGGCTGCAATTGAGGCAATGCCTAGTGTGACTAGTGAGGAGAAGCTGCAGTGCACAGTGTGCTTGGAGGATGTTGAGATTGGGAGTGAGGCAAAGGAGATGCCATGTAAGCATAAGTTCCATGGTGACTGCATTGTGTCATGGCTCAAGCTTCATGGTTCTTGTCCAGTTTGCAGGTTTCAGTTGCCATCTGAGGATTCTAATGTTGAAGCCAATGTGGGAATGGGAAATGGGGAACATCAGATTCAGAACAGTGAGATAGTCAGAGCTGGAGAAGAGAGACCAAGAAATGGAAGGAGGAATTGGTTTCCAGTGCTGCAGTCATTCAACAATTTCCTTCCTTCTCCTTGA 972 0.4702 MENDMEGVHWCNICLKMVNPMNDAENMCPFCETEFSEVMDNLRDQNEVIDLRSAWVFSLYAPIFLGLMGAFSPSLARIAPHGGSTSRGEEEVEQERENELVLGRRRRTSTYMMHLFRGLHVRMVSEFESLEETRSMDSSSILVIDPFNEGALIVRGPNLNHTSSPSESTAVGSSLNDLVVGSGFDMLLQHLAQIGPGGYASVNPPAQKAAIEAMPSVTSEEKLQCTVCLEDVEIGSEAKEMPCKHKFHGDCIVSWLKLHGSCPVCRFQLPSEDSNVEANVGMGNGEHQIQNSEIVRAGEERPRNGRRNWFPVLQSFNNFLPSP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00989 323 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 2 321 - -
Cca08g00989 323 MobiDBLite consensus disorder prediction 84 99 - -
Cca08g00989 323 Pfam Ring finger domain 224 266 IPR001841 -
Cca08g00989 323 ProSiteProfiles Zinc finger RING-type profile. 225 266 IPR001841 -
Cca08g00989 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 272 IPR013083 -
Cca08g00989 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 321 - -
Cca08g00989 323 SUPERFAMILY RING/U-box 214 272 - -
Cca08g00989 323 SMART ring_2 225 265 IPR001841 -
Cca08g00989 323 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00989 Cca-Chr8 23772436 23774133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00989 89 284 C3H Transcription Factor Family AT1G26800 31.658 3.58e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00989 K11982 - gmx:100790855 585.489