Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00987 ATGGACATGGATGTTTGCAGAAATGTATCAGTTTCCAGCGAGTGCCACCAAGAGCTTCCCACCCTTGATGACCTTTTCTCTCATCAGAACATGGAAGTGGATTTGGGCATGGAATGGTTGTCAGTGTTTGTGGAAGACTGTTTCTCTAGTAGGCCAAGTTGCCTCTTGGCACCCCCTTGTGTTGAAACCACAAGCACCAGCACCAGCACCAAGCCTTCAACCACAGTGCAAAGACCCCAACAAAAGCCTTTGCAGAATTTTACTGTGCCAGGGAAAGCCAGGAGCAAGAGGAAGAGGCTCTCAGCCCCTAGAACAAAGGACACTTTAGCCACATGGTCACAGCATCACTTGAGTGAAGGGCTGAGTTCTGACCCTCCTCTCTTGAAACAAGCCTATTGGTTGGCTGATAGTGAACTCATTGTCCCCaagaagaagaagaaggaagaaATTGTGGTGAGGAAGGAGAAATTGGAGGATTTTTTTGAGGGTGAGGTTAGGAATGATGAGCACCCAATTCCAAGAAGGTGCACACATTGTCTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGGCCAAAGACACTATGCAATGCATGTGGTGTGAGGTACAAGTCTGGAAGGTTGCTGCCAGAGTATAGGCCAGCCAAGAGCCCTACTTTTGTAAGCCATTTGCATTCTAATTCACACAAAAAGGTCATGGAGATGAGAATGGGGGTTCCATCATCCACACCTGCAGATAACTAG 750 0.4733 MDMDVCRNVSVSSECHQELPTLDDLFSHQNMEVDLGMEWLSVFVEDCFSSRPSCLLAPPCVETTSTSTSTKPSTTVQRPQQKPLQNFTVPGKARSKRKRLSAPRTKDTLATWSQHHLSEGLSSDPPLLKQAYWLADSELIVPKKKKKEEIVVRKEKLEDFFEGEVRNDEHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSHLHSNSHKKVMEMRMGVPSSTPADN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00987 249 ProSitePatterns GATA-type zinc finger domain. 176 201 IPR000679 GO:0006355|GO:0043565
Cca08g00987 249 Gene3D - 166 236 IPR013088 GO:0006355|GO:0008270
Cca08g00987 249 MobiDBLite consensus disorder prediction 60 108 - -
Cca08g00987 249 MobiDBLite consensus disorder prediction 60 88 - -
Cca08g00987 249 SMART GATA_3 170 224 IPR000679 GO:0006355|GO:0043565
Cca08g00987 249 Pfam GATA zinc finger 176 210 IPR000679 GO:0006355|GO:0043565
Cca08g00987 249 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 244 - -
Cca08g00987 249 ProSiteProfiles GATA-type zinc finger domain profile. 174 206 IPR000679 GO:0006355|GO:0043565
Cca08g00987 249 PANTHER GATA TRANSCRIPTION FACTOR 3 244 - -
Cca08g00987 249 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 234 - -
Cca08g00987 249 CDD ZnF_GATA 175 222 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00987 Cca-Chr8 23709043 23711059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00987 37 238 C2C2-Gata Transcription Factor Family AT4G32890 44.550 9.72e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca08g00987 GATA 1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00987 - - ccaj:109793203 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00674 07 9771823 9773749 Cca08g00987 08 23709043 23711059 PCT