Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00979 ATGGTCTCTCTCATCCCTTGGCACTTTCTTTTGACTATTATGTTCATTGCCTTTTTCAATCCAAACCTTAGTTTTGCAAAAATATCCAAGATAAATGGCTTGAAAATGAATGCTATTGATCGATGCTGGAGATATAATTCAGAATGGAGAAGGCATCGATCTGAATTAGCCACATGTTCTGTGGGCTATGCTGGCAAGATGTTAAACAACATGGGTAAAGACCTTATTCGTTATAAAGTTACTGACCTTAGTGATGATCCTATAAACCCCAAACCTGGCACCTTGAGGTATGGAGCTTCCATGATTCAAGGTAAAGTGTGGATTACATTCCAAAGAGACATGCATATCAAACTCGAGAAACCTCTTCTTATTAGTAGTTTCACCACTATTGATGGTCGAGGCATTAAAGTCGAGATTGCTGGTAATGCATGCTTAATGATCTTTAAGGCAACCAATGTAATCATTCATGGAATTCGGGTTCATCATTGCAAACCTCAAGCCCCTGGGATTGTGATGGGGCCTGAAGGAAAGTTGATTCCTTTGGGCCATGTGGATGGGGATGCAATTAGATTGGTTACTGCTTCAAAGATTTGGATTGATCATAATACACTTTATGATTGTCAAGATGGTCTACTTGATGTAACACGAGGTTCCACTAATGTGACTATTTCCAATAATTGGTTCAAAAACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGATATGTGAGAGACCAAAACATGATGGTTACCGTTGTGTACAACCATTTTGGACCTAATTGTAATCAACGCATGCCAAGGATTCGCTATGGATATGCACATGTAGCTAACAATCTTTACCAAGGATGGGTGCAATATGCCATTGGTGGAAGCATGGAACCTAGCCTCAAAAGTGAATCTAACCTCTTTATAGCACCAATAGTAGGGAGTAAGGAGGTGACATGGAGAAAGGCTAACAATAAAAATGGGGATAGATGGGAATTTTATTCAGTGGGTGATGCTTTTGAAAATGGAGCTTCCTTCACAATAACAAAAGGAGGACATGTGCCAAAGCCAAACTATACCAAGGAACAAAGTTTTGAAGTTGTTGATGTTAAATTTGTGAGATCATTAACACGTTCATCAGGTGTGCTACGGTGTACTAAAACCTCTATATGTTAA 1164 0.3926 MVSLIPWHFLLTIMFIAFFNPNLSFAKISKINGLKMNAIDRCWRYNSEWRRHRSELATCSVGYAGKMLNNMGKDLIRYKVTDLSDDPINPKPGTLRYGASMIQGKVWITFQRDMHIKLEKPLLISSFTTIDGRGIKVEIAGNACLMIFKATNVIIHGIRVHHCKPQAPGIVMGPEGKLIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTNVTISNNWFKNQDKVMLLGHDDGYVRDQNMMVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWVQYAIGGSMEPSLKSESNLFIAPIVGSKEVTWRKANNKNGDRWEFYSVGDAFENGASFTITKGGHVPKPNYTKEQSFEVVDVKFVRSLTRSSGVLRCTKTSIC 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00979 387 SMART amb_all 113 310 IPR002022 -
Cca08g00979 387 Gene3D - 36 380 IPR012334 -
Cca08g00979 387 Pfam Pectate lyase 125 304 IPR002022 -
Cca08g00979 387 PANTHER PECTATE LYASE 5 384 - -
Cca08g00979 387 PRINTS Pollen allergen Amb family signature 59 76 IPR018082 -
Cca08g00979 387 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Cca08g00979 387 PRINTS Pollen allergen Amb family signature 185 206 IPR018082 -
Cca08g00979 387 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Cca08g00979 387 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Cca08g00979 387 PRINTS Pollen allergen Amb family signature 327 351 IPR018082 -
Cca08g00979 387 PRINTS Pollen allergen Amb family signature 358 381 IPR018082 -
Cca08g00979 387 PANTHER PECTATE LYASE 18-RELATED 5 384 IPR045032 GO:0030570
Cca08g00979 387 SUPERFAMILY Pectin lyase-like 73 355 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00979 Cca-Chr8 23509100 23510584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00979 67 314 Polysaccharide Lyase AT5G09280 72.984 5.93e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00979 K01728 - gmx:100780437 681.404