Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00966 ATGGAAATTCAATTCCAGCATCCAAAGCAACACTTGAAGCCAAACAAATCATCAAAAGGAGGCAAACTCAAAGGGAGAAAGAACAACAGAAACAAGAACAAGTATGTTGGTGTGAGGCAAAGAGCCTCAGGGAAATGGGTTGCTGAGATCAAAGACACAACACAAAAGATAAGAATGTGGCTTGGCACGTATGAGACAGCAGAAGAAGCAGCAAGAGCTTATGATGAAGCTGCATGCCTTCTTCGTGGTTCCAACACACGCACCAACTTCCTCACACGTGTGTCCTTGGACTCCCCTCTTGCTTCACGGATTCAGAATCTTCTCAACACCAGAAAAGGTTCCAAAACCAAACAACATGAACAAGATGCTCAAACATGTGCCACAAGGGTAGTCaacaacaatcaacaagggttgagtctagcagaagatactaatcctccaccacatggtgaattaagTGAGACAACAACCCAACACACACAACTATTTGATGATGCTTATAGACCTGATTTGAGCGATTTCATGGAGTCTGAGTCAGGTTCTGAGAAGAATCCTTCATGGGGTTTTGAAGCTGTTTTTGATCGTTTTCCATTCAAACAAGTAATGGATATAGCAAATTTGCCTGATTTAGATGGCTTGGAGCTTCCAGAGTTTGAAAGGATGAAAGTTGAAAGACAAATATCAGCTTCACTTTATGCAATGAATGGTGTGCAAGAGTACATGGACACTGTTCAAGACTCTAATAGTGAATCTCTCTGGGATCTTTCACCCTTGTGCTCATTTTTGTGTTGA 792 0.3851 MEIQFQHPKQHLKPNKSSKGGKLKGRKNNRNKNKYVGVRQRASGKWVAEIKDTTQKIRMWLGTYETAEEAARAYDEAACLLRGSNTRTNFLTRVSLDSPLASRIQNLLNTRKGSKTKQHEQDAQTCATRVVNNNQQGLSLAEDTNPPPHGELSETTTQHTQLFDDAYRPDLSDFMESESGSEKNPSWGFEAVFDRFPFKQVMDIANLPDLDGLELPEFERMKVERQISASLYAMNGVQEYMDTVQDSNSESLWDLSPLCSFLC 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00966 263 MobiDBLite consensus disorder prediction 1 35 - -
Cca08g00966 263 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 249 - -
Cca08g00966 263 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Cca08g00966 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 13 249 - -
Cca08g00966 263 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Cca08g00966 263 MobiDBLite consensus disorder prediction 12 34 - -
Cca08g00966 263 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Cca08g00966 263 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Cca08g00966 263 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Cca08g00966 263 MobiDBLite consensus disorder prediction 138 157 - -
Cca08g00966 263 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Cca08g00966 263 CDD AP2 34 90 IPR001471 GO:0003700|GO:0006355
Cca08g00966 263 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00966 Cca-Chr8 23103433 23104419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00966 27 263 AP2-EREBP Transcription Factor Family AT5G19790 42.857 1.21e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g00966 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00966 K09286 - gmx:100782886 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00647 07 9417830 9419140 Cca08g00966 08 23103433 23104419 PCT