Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca08g00965 | ATGAACGATCTTCTAACGGAATCATTTGACATCCCACGTGGCCAAGGTCACGGAGGTGGGGACCTTGAGTTAGGAGAATATGCAAGGAATTCAGGAGACCTGGGCTTGGATAGTTTCTTCAAAAAGGTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAGAAAGCTCCAGGATGCCCATGAAGAATCCAGAGCTGTGACCAAGGCTCCTGCCATGAAGGCTATAAAGGAGAAAATGGAGAAAGATGTTGATGAAGTTAAGAAAACTGGTCATTACTTAAAGACCAAAATTGAAGAACTGGACAAAGAGAATTTGGCAAACAGGCAGAAGCCTGGATGTGGAAAAGGATCAGGTGTTGACCGGTCAAGAACAGCAACAACTATTTCTTTAAAAAAGAAACTAAAAGATAAAATGGCCGAATTTCAGACTCTGAGAGAGACCATCCATCAAGAGTATCGCGAGGTTGTTGAGAGACGTGTTTTTACAGTTACGGGTGCAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAAACTGGAGATAGTGAACAAATTTTCCAGAAGGCAATTCAGGAACAAGGACGAGGCCAGATAATGGACACCTTGGCAGAAATTCAAGAGCGACATGAAGCAGTTAGAGATGTTGAGAGAAAGCTTCTTGAATTACAACAGATATTTCTTGATATTGCGGTGTTAGTGGATGCACAAGGTGATATGCTTGACAACATTGAATCACAGGTTACAAGTGCAGTAGATCACGTGCAGCAAGGCAACAATGCTCTCCAGAAGGCCAAGAAACTACAAAAGAACTCTAGAAAATGGATGTGCATTGCAATCATGATACTTCTCATCGTTATTATAATCATCGTTGTTGCTGTCATCAAACCATGGGTTAGCAAAAGTGGTGCATAG | 924 | 0.4145 | MNDLLTESFDIPRGQGHGGGDLELGEYARNSGDLGLDSFFKKVQELDKQYAKLDKLLRKLQDAHEESRAVTKAPAMKAIKEKMEKDVDEVKKTGHYLKTKIEELDKENLANRQKPGCGKGSGVDRSRTATTISLKKKLKDKMAEFQTLRETIHQEYREVVERRVFTVTGARADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHEAVRDVERKLLELQQIFLDIAVLVDAQGDMLDNIESQVTSAVDHVQQGNNALQKAKKLQKNSRKWMCIAIMILLIVIIIIVVAVIKPWVSKSGA | 307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca08g00965 | 307 | SMART | tSNARE_6 | 201 | 268 | IPR000727 | - | |
| Cca08g00965 | 307 | Pfam | Syntaxin | 38 | 241 | IPR006011 | GO:0016020 | |
| Cca08g00965 | 307 | Gene3D | - | 197 | 299 | - | - | |
| Cca08g00965 | 307 | SMART | SynN_4 | 31 | 157 | IPR006011 | GO:0016020 | |
| Cca08g00965 | 307 | PANTHER | SYNTAXIN | 3 | 299 | IPR045242 | - | |
| Cca08g00965 | 307 | Coils | Coil | 135 | 155 | - | - | |
| Cca08g00965 | 307 | PANTHER | - | 3 | 299 | - | - | |
| Cca08g00965 | 307 | Coils | Coil | 43 | 73 | - | - | |
| Cca08g00965 | 307 | CDD | SynN | 36 | 193 | IPR006011 | GO:0016020 | |
| Cca08g00965 | 307 | ProSitePatterns | Syntaxin / epimorphin family signature. | 212 | 251 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Cca08g00965 | 307 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 206 | 268 | IPR000727 | - | |
| Cca08g00965 | 307 | SUPERFAMILY | t-snare proteins | 34 | 261 | IPR010989 | GO:0016020|GO:0016192 | |
| Cca08g00965 | 307 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Cca08g00965 | 307 | CDD | SNARE_syntaxin1-like | 205 | 267 | - | - | |
| Cca08g00965 | 307 | Gene3D | - | 33 | 160 | - | - | |
| Cca08g00965 | 307 | Pfam | SNARE domain | 242 | 294 | IPR000727 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca08g00965 | Cca-Chr8 | 23089861 | 23097889 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca08g00965 | 1 | 307 | SNARE and Associated Proteins | AT3G03800 | 73.290 | 2.18e-157 | 440 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca08g00965 | K08486 | - | gmx:100306329 | 527.324 |