Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00963 ATGGACGAGGATCAAGAGATGGAGAGATTTGGAATGGACAATGATTATGAGGGTGGTCAATGGATCGGTGGCGAGTTTTACTATAAGAAACGTAAAGAAAAGCGCACGCAGACCAAAGATGATGTTCTTTATGGAGTTTTTGCAGATTCTGACGACAACGAAGATGATGATTATTCGAGTAGAAAACGGAGAAGGGATCGCGATTTTTCGAAGAAGCCTGACCTCACCAAGCCTGTGAATTTTGTGTCTACAGGCATTTTTATGCCTAATCAGGAAATTGATAATAAGTCCAAAGAGCTGGATGAGAAAGATGGTTATGTTAGTGAGGATAGGCCGGGATTAGGTTTAGGCTTTGGTATGGGGTCTGCTACCACTTCTGGGTCTGGTTTAGGCTTTAATTCTAGTAATTCTGCAAAAGGTTCTGTAAGAAatgatgattctgatgagaatgatgataatACTTTCTTGCCTACAGCGTTTGGGAAGAAGATTAAGGAGGGGGCAATGAGAAGGGAAAAGGAAAGGGAGAGGGAGAGGTTGGAGAAGAAGAGGGGGAAGCATCAGAGTTTAGGTCAAGATGGGTCTGGTGATGTTGGGAAATTTGAGAAGCATACAAAAGGGATAGGGATGAAGCTGTTGGAGAAGATGGGTTATAAAGGAGGTGGGCTCGGGAAGAATGAGCAAGGTATTCTGGCTCCTATTGAGGCGAAATTGAGGGCCAAGAATTCTGGTATTGGGTTTAATGAGTCTAAGGAGACTATGCCGTTGCCTGCTTTGCAGCAAGAGAAGAAGAGTGTGCCTGAAGTCACCCAACCCGCGGTTGGCAGAACAAAAGAGAGGTCTTGGTCAAAACAAGCAAGATTGAAAAAGAAAAAAGATGAAGAGTATATAACTGCTGAGGAGTTGTTGGCGAGCAAGCAAGAACAAGAGTTGGAGGTTGTTCAGAAGGTTTATGATATGAGGGGGCCACAAGTTCGAGTTTTAACAAATTTGTCTGATTTGAATGCTGAGGAGAAAGCAAAAGAAAATGATGTCCCCATGCCGGAACTTCAGCATAACATAGCATTAATAGTTCGGTTGGCAGAGACTGACATCCAAGAGATTGATAGAGATTTGAGGAGAGAGAGGGAGACAGCACTTAGCTTGAAAAAGGAAAAAGAGAAGTTAGAAACTGAGGCAGCATTTCAAAAGCAGCAGCTGGATAATTTGGAGGAAATAATGAGTTTGTTAGACCATGTTGGAGAAGAGAACACTTTGGGAACGTTAACATTGGATTCCCTTGCTCGGTGCTTCGGTGACTTACGCAAAAGATATGCTGATAACTACAAGTTGTGTAACTTGTCATGCATTGCTTGCTCATATGCTCTGCCTCTGTTTATCAGAGTTTTCCAAGGATGGGATCCTCTTCGAAATCCATCTCATGGGTTGGAGTTGGTATCGCAGTGGAAGGAACTACTTCAAGGAGAAGATTCTTTTGATATATGGGATGTATCATCACCTTATACTCTGTTGGTTTCAGAGGTTGTATTGCCAGCTGTTAGAATATCTGGCATCAATACCTGGCAGGCACGGGATCCTGAGCCAATGTTATGGTTTCTGGAATCCTGGGAAAAGTTGCTTCCTTCTTCAGTCCTTGCTACCGTATTAGACAATATAATCATGCCAAAATTATCAAGTGCTGTAGATACTTGGGAGCCACATCGTGAGACTATTCCTATTCACACTTGGGTGCATCCATGGTTACCACTGCTGGGACACAAGTTGGAGGGTATTTACCAGGTGATTCGATTTAAATTGAGCACTGTTCTTGGTGCCTGGCACCCAAGTGATGGTTCTGCTTATGCTATATTGTCTCCATGGAAGACTGTATTTGATTCTGCAAGTTGGGAACAGCTTATGCTTCGTTTTATTGTACCAAAGTTGCAGCTTGTCTTGCAAGAGTTCCAAGTGAACCCAGCAAATCAGAATCTTGATCAGTTTTATTGGGTAATGAACTGGGCTTCTGCTATTCCTATTCATCTTATGGTTGATATGATGGAGAAATTCTTCTTTGCCAAATGGCTTCAGGTTTTGTATCATTGGTTGTGCTCAAGTCCTAACTTTGAAGAAGTTACAAAATGGTATTTGGGGTGGAAAGAACTCATTCCAAAGGAACTTTTGGCAAATGAAAGTATCAGATACCAGCTTAATCGTGGTCTTGATATGATGAACCAGGCTGTTGAAGGTATGGAGGTTGTCCAACCTGGTTTAAAGGAGAATATAAGTTATCTTAGGGTACTTGAGCAAAGACAATTTGAGGCTCAACAAAAAGCAGCAGCATATGCCCAACAGCAAGCTGCTGCAAGCTTGGGCGGTACGGCCAATGTTGATGGTGTGCACGAATTGAGCTTGAAAGAAGTCATTGAAGCCCATGCTCAGCAACATGGTTTGCTATTCAAGCTTAAACCTGGGAGAATGCACAATGGTCATCAAATATATGGGTTTGGTAATGTCAGCATAATAATAGACTCTCTAAATCAAAAAGTATATGCCCAAAATGAAGACACATGGTCTTTGGAATCTCTTCAAGGCTTGCTAGAGTTGCATAATAAATCCCTTACCAAAAGACGCTGA 2613 0.4187 MDEDQEMERFGMDNDYEGGQWIGGEFYYKKRKEKRTQTKDDVLYGVFADSDDNEDDDYSSRKRRRDRDFSKKPDLTKPVNFVSTGIFMPNQEIDNKSKELDEKDGYVSEDRPGLGLGFGMGSATTSGSGLGFNSSNSAKGSVRNDDSDENDDNTFLPTAFGKKIKEGAMRREKERERERLEKKRGKHQSLGQDGSGDVGKFEKHTKGIGMKLLEKMGYKGGGLGKNEQGILAPIEAKLRAKNSGIGFNESKETMPLPALQQEKKSVPEVTQPAVGRTKERSWSKQARLKKKKDEEYITAEELLASKQEQELEVVQKVYDMRGPQVRVLTNLSDLNAEEKAKENDVPMPELQHNIALIVRLAETDIQEIDRDLRRERETALSLKKEKEKLETEAAFQKQQLDNLEEIMSLLDHVGEENTLGTLTLDSLARCFGDLRKRYADNYKLCNLSCIACSYALPLFIRVFQGWDPLRNPSHGLELVSQWKELLQGEDSFDIWDVSSPYTLLVSEVVLPAVRISGINTWQARDPEPMLWFLESWEKLLPSSVLATVLDNIIMPKLSSAVDTWEPHRETIPIHTWVHPWLPLLGHKLEGIYQVIRFKLSTVLGAWHPSDGSAYAILSPWKTVFDSASWEQLMLRFIVPKLQLVLQEFQVNPANQNLDQFYWVMNWASAIPIHLMVDMMEKFFFAKWLQVLYHWLCSSPNFEEVTKWYLGWKELIPKELLANESIRYQLNRGLDMMNQAVEGMEVVQPGLKENISYLRVLEQRQFEAQQKAAAYAQQQAAASLGGTANVDGVHELSLKEVIEAHAQQHGLLFKLKPGRMHNGHQIYGFGNVSIIIDSLNQKVYAQNEDTWSLESLQGLLELHNKSLTKRR 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00963 870 PANTHER TUFTELIN-INTERACTING PROTEIN 11-RELATED 7 856 IPR045211 GO:0000390
Cca08g00963 870 MobiDBLite consensus disorder prediction 94 109 - -
Cca08g00963 870 Coils Coil 170 190 - -
Cca08g00963 870 PANTHER TUFTELIN-INTERACTING PROTEIN 11 7 856 - -
Cca08g00963 870 MobiDBLite consensus disorder prediction 164 190 - -
Cca08g00963 870 MobiDBLite consensus disorder prediction 40 202 - -
Cca08g00963 870 PIRSF TFIP11 1 865 IPR024933 -
Cca08g00963 870 Pfam G-patch domain 205 246 IPR000467 GO:0003676
Cca08g00963 870 Pfam GC-rich sequence DNA-binding factor-like protein 424 691 IPR022783 -
Cca08g00963 870 ProSiteProfiles G-patch domain profile. 205 250 IPR000467 GO:0003676
Cca08g00963 870 SMART G-patch_5 203 248 IPR000467 GO:0003676
Cca08g00963 870 Coils Coil 358 406 - -
Cca08g00963 870 Pfam Tuftelin interacting protein N terminal 4 104 IPR022159 -
Cca08g00963 870 MobiDBLite consensus disorder prediction 121 141 - -
Cca08g00963 870 Coils Coil 289 309 - -
Cca08g00963 870 MobiDBLite consensus disorder prediction 55 74 - -
Cca08g00963 870 MobiDBLite consensus disorder prediction 260 286 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00963 205 249 C2H2 Transcription Factor Family AT5G26610 48.889 3.63e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00963 K13103 - gmx:100781621 1564.28