Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00956 ATGGCTAAGCATGATGTTGAGGTGGCTGAGCGTGGTTCCTTCTCTGCCAAGGACTACCATGACCCTCCTCCAGCACCCTTGATTGATGCTGAGGAGCTCACAAAGTGGTCCTTCTACAGGGCTCTGATTGCTGAGTTCATTGCCACACTGCTCTTCCTTTACATCACTGTGCTCACTGTGATTGGTTACAAGAGCCAGAGTGATGTCAAGGCTGGGGGTGATGTGTGTGGTGGTGTTGGCATTCTTGGCATTGCTTGGGCCTTTGGTGGCATGATATTCATCCTTGTTTACTGCACTGCTGGAATCTCTGGGGGTCACATAAACCCAGCAGTGACATTTGGGCTGTTCTTGGCTCGTAAGGTGTCTTTGATTAGAGCTATATTGTACATGGTGGCTCAGTGCTTGGGGGCCATATGTGGAGTTGGGTTAGTTAAGGCCTTCCAAAAGGCTTACTACAACAGGTATGGTGGTGGGGCCAATGAGCTCAGTGCAGGGTACAGCACTGGTGTTGGATTGGGTGCAGAGATCGTTGGAACCTTCGTTTTGGTGTACACTGTGTTCTCTGCAACTGACCCCAAGAGGAGTGCTAGAGATTCTCATGTGCCGGTTTTGGCTCCACTTCCAATTGGTTTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCTGTCACTGGCACTGGTATTAACCCTGCTAGGAGTCTTGGAGCAGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTACCACCAATTCATCTTGAGAGCAGGTGCTGCTAAGGCTCTTGGATCATTCAGGAGCAACCCCAGTACTCTTTGA 870 0.5011 MAKHDVEVAERGSFSAKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKSQSDVKAGGDVCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGVGLVKAFQKAYYNRYGGGANELSAGYSTGVGLGAEIVGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVMYNQQKAWDDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALGSFRSNPSTL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00956 289 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Cca08g00956 289 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g00956 289 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g00956 289 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g00956 289 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g00956 289 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g00956 289 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g00956 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 285 IPR034294 -
Cca08g00956 289 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g00956 289 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
Cca08g00956 289 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
Cca08g00956 289 PANTHER AQUAPORIN PIP2-4-RELATED 5 285 - -
Cca08g00956 289 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g00956 289 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00956 Cca-Chr8 22802240 22806184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00956 1 284 Major Intrinsic Protein MIP AT2G37170 84.155 1.82e-177 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00956 K09872 - gmx:547857 555.058