Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00954 ATGGTTGGAAACTTCATCGACGACATTGACTGCAGCAGCTTCTTCGACCACATCGACGACCTCCTCGATTTCCCCGTCGAAGACGCCGCCACAGCCGACAACTCCGCCGCTGCACCGGTCTGCCCTCCGGCGAGCTTCTGGTCCGCCGAGTCCGACTCGCTGCCCGCCGCAGACACTGTGTTTTCCGGCAGCGCCGTGCCAGACCTCTCGGCAGAGCTCTCCGTTCCGTATGAAGACATTGTGCAATTGGAATGGTTGTCCAATTTTGTTGAGGACTCTTTCTCATGTGGAAGCCTCACCATGAAGAAAGAGGAGCCACAATGCAGCACAAAGGATGACACAGCTCACACCCAGTTCCAGACAGCAAGCCCGGTCTCAGTCCTGGAAGCCACCACTTTCTCCTCCGGCGAGAAGGCCGCCGCGCCTCGCAGCCCGGAGCTCTACATCCCGGTGCCATGTGGCCGTGCCCGCAGCAAGCGTCCACGCCCTGCAGCCTTCAACCCCCATCCAGTGATGCAGCTCATATCCCCTGCATCCTCCACCGGCGAAAGCACGCAGCACAAGGCCTCTCCCTCGTCAGAGTCCGAGAACTTCGCCGAGTCGGCGATCAAGCCGGCGAAGCAGGCCTCCGGGGAGCAcaagaagaaaaagaagatcaaagtagcacaatgcagcatcacaaagcagtggcaagagcagaataatgcagcaacagcaacagcaacagcagcagTTAGGAAATGTCTGCACTGTGAAATAACCAAGACGCCTCAGTGGAGGGCAGGGCCAATGGGGCCGAAAACACTCTGCAATGCTTGTGGCGTGCGCTACAAGTCAGGCCGGCTGTTCCCCGAATACCGTCCGGCAGCCAGTCCGACGTTCTGCGCCGCCGTGCACTCCAACTCCCATAAGAAGGTTCTTGAAATGAGAAACAAGACAGGCACCCAATCTGGCTTTGCAAATGACTCAGTTGCCTCACCAGAACTTATTCCAAACACTGACGCCAGCCTTTCACTGGAATACATGTGA 1029 0.5316 MVGNFIDDIDCSSFFDHIDDLLDFPVEDAATADNSAAAPVCPPASFWSAESDSLPAADTVFSGSAVPDLSAELSVPYEDIVQLEWLSNFVEDSFSCGSLTMKKEEPQCSTKDDTAHTQFQTASPVSVLEATTFSSGEKAAAPRSPELYIPVPCGRARSKRPRPAAFNPHPVMQLISPASSTGESTQHKASPSSESENFAESAIKPAKQASGEHKKKKKIKVAQCSITKQWQEQNNAATATATAAVRKCLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAVHSNSHKKVLEMRNKTGTQSGFANDSVASPELIPNTDASLSLEYM 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00954 342 MobiDBLite consensus disorder prediction 158 218 - -
Cca08g00954 342 ProSitePatterns GATA-type zinc finger domain. 248 273 IPR000679 GO:0006355|GO:0043565
Cca08g00954 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 246 305 - -
Cca08g00954 342 Pfam GATA zinc finger 248 281 IPR000679 GO:0006355|GO:0043565
Cca08g00954 342 ProSiteProfiles GATA-type zinc finger domain profile. 242 278 IPR000679 GO:0006355|GO:0043565
Cca08g00954 342 PANTHER GATA TRANSCRIPTION FACTOR 1 342 - -
Cca08g00954 342 SMART GATA_3 242 292 IPR000679 GO:0006355|GO:0043565
Cca08g00954 342 Gene3D - 243 292 IPR013088 GO:0006355|GO:0008270
Cca08g00954 342 PIRSF Txn_fac_GATA_plant 2 336 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cca08g00954 342 PANTHER GATA TRANSCRIPTION FACTOR 8 1 342 - -
Cca08g00954 342 CDD ZnF_GATA 247 294 IPR000679 GO:0006355|GO:0043565
Cca08g00954 342 MobiDBLite consensus disorder prediction 173 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00954 Cca-Chr8 22682423 22688896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00954 18 312 C2C2-Gata Transcription Factor Family AT4G32890 36.513 6.81e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca08g00954 GATA 1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00954 - - gmx:100783228 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00954 08 22682423 22688896 Cca02g02024 02 40141182 40144348 PCT