Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00948 ATGGTTTCCATCAATGGAGAGGGTGAATTGGTGCCCAATGAAGCATCGAACAAAGAGGCTCATCTCTCTGCTCTTTTACTTGCTAATAACCAGATGTTGACAGTGGTCATGAATGCTGCTATTGAGCTCAACTTGTTTGAGATCATAGGTAATAATGATGCATTCATGTCAGCCTCTGAAATTGCTTCTAAGATGGCAATAGAACACTACTCAGAGTTACCAAATAGGCTCGAACGCATGCTTCGTTTGCTTGCGAGTCATTCTCTTCTAACATGTGCCACTCGTACCACTGCTGATGGCAACATTGAAAGAGTTTATAAAGTGTCATCAGTTGGAAAATACTTTGTCACAGATGAGAGTGGGGGCACTTTGGCTTCATTTACATCTCTTCTATGCTCTCGTGCTATGTCTCAGGTTTGGCCCACTTTTAAGGATGGTATCATCGATGCTACTGCTGATGACCTATTCAAAAAAGTTTATGGAATGCCAGCATTCCAATACGCAGACAAAGATCCAACATTCAACCAGCTTTTCAACAAGGCAATGGATGAAATAAGCACCTTGGACATGAAAGCCATTTTCCAAGTGTATAAAGGATTTGAAGGAATATCAACACTGGTTAATGTAGGAGGAGGAACCGGGAAAACGCTAGATATGATAATTTCAGAGTACCCTTCAATAAAGGGTATTAATTTTGATTTGCCCCACGTTGTTGAAAAGGCACCAACCTACCCAGGCATAAAGCACGTTGGAGGAGATATGTACGTAAGTGTACCTCAGGGTGATGCCATATTTCTAAAGGCTGTACTGCACAATTGGTCGGATGAAGACTGCTTAAGGCTTTTGAGGAATTGTCACAAGGCACTGCCACAAAATGGAAAGGTGATTATTGTCGACTTTATAGTGCCAGAAACACCAAATTCAGATGCATCTAAGATAGTTTCTTTAGTCGACAACATCATGTTTGTCATTGGTGGTAGGGAGAGAACAAGCAACGAATTTGAGGCTTTATCCAAGCTTTCGGGATTTTCAGGATTTGAAGTTGCTGTCTGTGCACTTGGTGCCTTAGGAGTCATGGAATTTCACAAATAa 1092 0.4139 MVSINGEGELVPNEASNKEAHLSALLLANNQMLTVVMNAAIELNLFEIIGNNDAFMSASEIASKMAIEHYSELPNRLERMLRLLASHSLLTCATRTTADGNIERVYKVSSVGKYFVTDESGGTLASFTSLLCSRAMSQVWPTFKDGIIDATADDLFKKVYGMPAFQYADKDPTFNQLFNKAMDEISTLDMKAIFQVYKGFEGISTLVNVGGGTGKTLDMIISEYPSIKGINFDLPHVVEKAPTYPGIKHVGGDMYVSVPQGDAIFLKAVLHNWSDEDCLRLLRNCHKALPQNGKVIIVDFIVPETPNSDASKIVSLVDNIMFVIGGRERTSNEFEALSKLSGFSGFEVAVCALGALGVMEFHK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00948 363 Pfam O-methyltransferase domain 140 344 IPR001077 GO:0008171
Cca08g00948 363 Gene3D Vaccinia Virus protein VP39 175 351 IPR029063 -
Cca08g00948 363 PIRSF O-mtase 5 363 IPR016461 GO:0008168
Cca08g00948 363 SUPERFAMILY "Winged helix" DNA-binding domain 19 119 IPR036390 -
Cca08g00948 363 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 363 IPR016461 GO:0008168
Cca08g00948 363 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 21 363 - -
Cca08g00948 363 Gene3D - 32 193 IPR036388 -
Cca08g00948 363 PANTHER O-METHYLTRANSFERASE 21 363 IPR016461 GO:0008168
Cca08g00948 363 Pfam Dimerisation domain 36 85 IPR012967 GO:0046983
Cca08g00948 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 355 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00948 Cca-Chr8 22413290 22419835 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00948 7 354 Monolignol Biosynthesis Gene Families AT5G54160 48.148 1.33e-119 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00948 - - ag:AAB48059 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00948 08 22413290 22419835 Cca08g00948 08 22413290 22419835 ECH