Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00947 ATGTTGACAGTGGTCATGAATGCTGCTATTGAGCTCAACTTGTTTGAGATCATAGGTAATAATGATGCATTCATGTCAGCCTCTGAAATTGCTTCTAAGATGGCAATAGAACACTACTCAGAGTTACCAAATAGGCTCGAACGCATGCTTCGTTTGCTTGCGAGTCATTCTCTTCTAACATGTGCCACTCGTGCCACTGCTGATGGCAACACCGAAAGAGTTTATAAAGTGTCATCAGTTGGAAAATACTTTGTCACAGATGAAAGTGGGGGCACTTTGGCTTCATTTACTTCTCTTCTATGCTCTCGTGCTATGTCTCAGGTTTGGCCTAATTTTAAGGATGCTATAATTGATGCCGCCGCTGATGACCTATTCAATAAAGTTCATGGAATGTCAACATTCCAATACGCTGATAAATATCCAGCACAGAACCACATTTTCAACAAGGCAGTGAACGGTATAAGCACCATGGACATGAAAGCCATTTTACAAGAGTATACAGGATTTGAAGGAATATCAACACTGGTTAATGTAGGTGGAGGAATCGGAGAAATGCTACATATGATAATCTCTAAGTACCCTTCAATAAAGGGCATTAATTTTGATTTGCCCCACGTTGTTGAAAAGGCACCAACATATCCAGGCATAGAACATGTTGGAGGAGACATGTACGTAAGTGTACCCCAGGGTGATGCCATAATTCTAAAGGCTGTGCTGCACAATTGGTCGGATGAAGACTGCTTAAGGCTCTTGAGAAATTGTCACAAGGCACTGCCACAAAATGGAAAGGTGATTGTTGTGGACCTAATAGTGCCAGAAGCATCAGATTCTGATGAATCAAAGATTGTTTCTATCATCGACAATCTCATGTTTGTCATTGGTGGTAAGGAGAGAACAACTAATGAATTTGAGGCTTTATCCAAGCTTTCGGGATTTCCAGGATTTGAAGTTGTTTCTAGAGCATTTGGTGCCTTGGGAGTCATGGAATTTCACAAATAA 999 0.4094 MLTVVMNAAIELNLFEIIGNNDAFMSASEIASKMAIEHYSELPNRLERMLRLLASHSLLTCATRATADGNTERVYKVSSVGKYFVTDESGGTLASFTSLLCSRAMSQVWPNFKDAIIDAAADDLFNKVHGMSTFQYADKYPAQNHIFNKAVNGISTMDMKAILQEYTGFEGISTLVNVGGGIGEMLHMIISKYPSIKGINFDLPHVVEKAPTYPGIEHVGGDMYVSVPQGDAIILKAVLHNWSDEDCLRLLRNCHKALPQNGKVIVVDLIVPEASDSDESKIVSIIDNLMFVIGGKERTTNEFEALSKLSGFPGFEVVSRAFGALGVMEFHK 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00947 332 PANTHER O-METHYLTRANSFERASE 4 332 IPR016461 GO:0008168
Cca08g00947 332 PIRSF O-mtase 1 332 IPR016461 GO:0008168
Cca08g00947 332 Pfam O-methyltransferase domain 109 312 IPR001077 GO:0008171
Cca08g00947 332 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 4 332 - -
Cca08g00947 332 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 92 323 IPR029063 -
Cca08g00947 332 Pfam Dimerisation domain 5 54 IPR012967 GO:0046983
Cca08g00947 332 Gene3D - 1 121 IPR036388 -
Cca08g00947 332 Gene3D - 128 162 IPR036388 -
Cca08g00947 332 CDD AdoMet_MTases 178 271 - -
Cca08g00947 332 Gene3D Vaccinia Virus protein VP39 144 320 IPR029063 -
Cca08g00947 332 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 332 IPR016461 GO:0008168
Cca08g00947 332 SUPERFAMILY "Winged helix" DNA-binding domain 3 88 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00947 Cca-Chr8 22369495 22381072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00947 1 323 Monolignol Biosynthesis Gene Families AT5G54160 48.773 1.58e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00947 - - ccaj:109800335 439.113