Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00943 ATGGGCAGGTATGAGTACACCCCCACTTGTTTTCTTAGTATTATGTTCTTCTTTTGTTTCTGTCCTATGGTGTTGTCCCTGCTGTCACAAAACCAAACGGAAACCATGTCCAATCTCTCCAAAAGTCTTGCTTTTCCTGTTACATGGAGTGACTCAAACCCATGTGCATGGAAGGGAGTGACTTGTGACAATACCGATTCCTCCGTAGTAGGGGTTTCTCTATCTGGGTTTTCACTCTCTTCTTCTGACTTTCTTCCTGTTGTTTGCAAAATTGAAACTTTGGAGCATCTTGATGTCTCTAACAACCGTCTGAGCTCAATCCCAGATGGTTTCATCACTGAGTGTGGGAAGATTAAGGGGTTGAAGCTGTTGAATTTCAGTAAAAACCATTTAGAAGGTGTTTTACCTACTTTTAGTGGTTTTGATGGATTGGAAACCCTTGATATGTCTTTCAATCACTTGACAGGGAGGGTTGGTTTAGAGTTAGATGGGTTGGTTAGCCTCAAAAGTTTGAATCTTAGTTTCAATAACTTCATGGGGTCTCTTCCTACCAAACTGGGAAAGTCCATGGTTTTGGAGTGGCTTGTGCTTTCTAACAATCACTTTAATGGAGAAATCCCTGATGAATTGTTTAGTTATGAAAACTTGACTGGGATTGATCTTAAGGCAAATGAACTTTCCCAGTCTATTCCTACCAATATAGGGAAGCTTTCTAAATTGGAAACTTTGATCCTTTCCTCTAATAAACTCGTTGGTGAAATTCCAACTTCACTTTTGAACCTCACAAAACTTTCAAGATTTGCAGCAAATCTGAACAATTTCACAGGTCCTGTACCTCCTGGGATTACAAAATATCTCACAAATTTGGATCTCAGTTTTAATAAATTGTCTGGGTCCATTCCAGAAGACCTTTTATCTCCATCACAGTTGCTGGTTGTAGATTTGTCCAATAATCAGTTAAGTGGGTCATTACCTACAAAAGTTTCTCCAAGCTTGTTCCGGTTGAGGTTTGGGGGCAATCATCTGGGTGGAAATATTCCTTCAGATGGTTTTGCTAGAGTTGAAAATTTGACATACTTGGAGCTGGATGACAATGAGTTCTACGGATCAATACCAGCTGGTTTGGGTTCTTGCAGGAATTTGGCATTGCTGAATTTAGCTCAGAATCACTTGAGTGGTGTATTGCCTCCACAGCTTGGTAATCTTAGCAATCTTCAAGTCTTGAAGCTTCAATTAAACAACCTAGGTGGTACAATCCCATATCAATTTGGCCAACTTCTTAAGTTGTCAACGCTGAATTTGAGTTCAAATTCTCTGGGTGGATCAATTCCATCTGAGATAACAAGTTTGAGCAGTCTTACTATGTTGCACTTGCAAAGCAACAATCTGAATGGTTCCATACCGACATTCATTAGCAACCTAAAATCTCTTTTAGAGCTTCAACTTGGGCGAAACCAGCTAAGTGGTGAGATTCCAAGCATGCCAGTCAGTCTGCAGGTTTCACTGAATCTTAGTAGCAACCACTTTAGTGGTCCTATTCCTGACCGTTTTCATACTTTGTATAGTCTGGAAGTCTTGGATCTCTCAAATAACAATTTTACTGGTCCAGTCCCCGATTATCTAACTGAATTGTCAGCTTTGACACTGTTGTTACTTTCTAACAATCAGCTGTCTGGTGAAATTCCAAATTTTAGTCAACACGTTCATGTTGAATATGATGGAAATTATCTGAAAAATACTTCTGCCCAGGACAACCCATTACTCAACCGTGCCTCTAAGAAGGGAATATCTATTGCTGTGGCAATACCCATTGCAATTGTAGTTCCTTTAGTTTTAGTTGTCCTTGTCACTCTGTTGGTTTTGTCGAGAAAAAACCATCACCATCCTCAAGTCATCCGTAGTAATTTATTAAATCCTATTGGAATGGATAAATCAAGCATTGTCTTCTCTAAAGCCATGGAAGTTGTTTCTAAATCATCAAATATTACTCTAAAAACAAGGTTTTCCACTTATTATAAGGCCATCATGCCATCTGGATCAATTTATTTTGTCAAGAAACTAAACTGTTCTGACAAAATATTGCCGGTGGTAAGTCATAATCAATTTGGGAAAGAGCTAGAAGTCTTGGCAAATTTGAATAATTCAAATGTCATGACTCCTTTGGCCTATGTTTTATCCACTAATACTGCTTACATACTATACGAATTTATCTCAAATGGACCCCTCTTTGATGTTCTTCATGGAAACATGGAAAACTCTTTAGATTGGGCTAGCAGATATAGTATAGCTGTTGGGGTGGCTCAAGGACTGTCTTTTCTTCACGGATTTGCCTCTAGTCCAATACTACTCCTTGACCTATCAAGTAAAAGTATTATGCTGAAGTCTCTTACGGAGCCTCTAGTTGGGGATATTGAACACTACAATGTGATTGATCCCTCAAAGAGTACAGGGAATTTTTATGCAGTTGTTGGTTCTGTTGGTTATATTCCTCCAGAGTATGCATACATAATGACAGTTACAATGGCTGGGAATGTCTACAGTTTTGGTGTCATTCTGCTTGAACTGCTAACTGGAAAACCTGCAGTCACTGATGGATTGGAATTGGTCAAGTGGGTTTTAAGTAATCCAACAAACCAAGATTACATTCTTGATTTTAATGTCAGCAGAACATCAGAAGCCATTAGAAACCATATGCTTGCAATTCTCAATATTGCTCTTGTTTGTGTTAGTACATCCCCAGAAGCAAGACCAACAATGAAGAGTGTGCTAGAGATGCTTCTAAATACCAGATGA 2793 0.3895 MGRYEYTPTCFLSIMFFFCFCPMVLSLLSQNQTETMSNLSKSLAFPVTWSDSNPCAWKGVTCDNTDSSVVGVSLSGFSLSSSDFLPVVCKIETLEHLDVSNNRLSSIPDGFITECGKIKGLKLLNFSKNHLEGVLPTFSGFDGLETLDMSFNHLTGRVGLELDGLVSLKSLNLSFNNFMGSLPTKLGKSMVLEWLVLSNNHFNGEIPDELFSYENLTGIDLKANELSQSIPTNIGKLSKLETLILSSNKLVGEIPTSLLNLTKLSRFAANLNNFTGPVPPGITKYLTNLDLSFNKLSGSIPEDLLSPSQLLVVDLSNNQLSGSLPTKVSPSLFRLRFGGNHLGGNIPSDGFARVENLTYLELDDNEFYGSIPAGLGSCRNLALLNLAQNHLSGVLPPQLGNLSNLQVLKLQLNNLGGTIPYQFGQLLKLSTLNLSSNSLGGSIPSEITSLSSLTMLHLQSNNLNGSIPTFISNLKSLLELQLGRNQLSGEIPSMPVSLQVSLNLSSNHFSGPIPDRFHTLYSLEVLDLSNNNFTGPVPDYLTELSALTLLLLSNNQLSGEIPNFSQHVHVEYDGNYLKNTSAQDNPLLNRASKKGISIAVAIPIAIVVPLVLVVLVTLLVLSRKNHHHPQVIRSNLLNPIGMDKSSIVFSKAMEVVSKSSNITLKTRFSTYYKAIMPSGSIYFVKKLNCSDKILPVVSHNQFGKELEVLANLNNSNVMTPLAYVLSTNTAYILYEFISNGPLFDVLHGNMENSLDWASRYSIAVGVAQGLSFLHGFASSPILLLDLSSKSIMLKSLTEPLVGDIEHYNVIDPSKSTGNFYAVVGSVGYIPPEYAYIMTVTMAGNVYSFGVILLELLTGKPAVTDGLELVKWVLSNPTNQDYILDFNVSRTSEAIRNHMLAILNIALVCVSTSPEARPTMKSVLEMLLNTR 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00943 930 SUPERFAMILY RNI-like 245 577 - -
Cca08g00943 930 Pfam Protein kinase domain 668 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00943 930 Gene3D Transferase(Phosphotransferase) domain 1 737 930 - -
Cca08g00943 930 PRINTS Leucine-rich repeat signature 286 299 - -
Cca08g00943 930 PRINTS Leucine-rich repeat signature 520 533 - -
Cca08g00943 930 Gene3D Ribonuclease Inhibitor 330 397 IPR032675 -
Cca08g00943 930 Gene3D Ribonuclease Inhibitor 285 329 IPR032675 -
Cca08g00943 930 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 927 - -
Cca08g00943 930 Pfam Leucine rich repeat 93 154 IPR001611 GO:0005515
Cca08g00943 930 Pfam Leucine rich repeat 192 250 IPR001611 GO:0005515
Cca08g00943 930 Pfam Leucine rich repeat 403 463 IPR001611 GO:0005515
Cca08g00943 930 Pfam Leucine rich repeat 501 557 IPR001611 GO:0005515
Cca08g00943 930 Gene3D Phosphorylase Kinase; domain 1 649 736 - -
Cca08g00943 930 ProSiteProfiles Leucine-rich repeat profile. 93 114 IPR001611 GO:0005515
Cca08g00943 930 Gene3D Ribonuclease Inhibitor 184 284 IPR032675 -
Cca08g00943 930 Gene3D Ribonuclease Inhibitor 499 588 IPR032675 -
Cca08g00943 930 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Cca08g00943 930 Gene3D Ribonuclease Inhibitor 398 498 IPR032675 -
Cca08g00943 930 SUPERFAMILY L domain-like 68 325 - -
Cca08g00943 930 SUPERFAMILY Protein kinase-like (PK-like) 668 926 IPR011009 -
Cca08g00943 930 SMART LRR_typ_2 354 378 IPR003591 -
Cca08g00943 930 SMART LRR_typ_2 402 425 IPR003591 -
Cca08g00943 930 SMART LRR_typ_2 165 189 IPR003591 -
Cca08g00943 930 SMART LRR_typ_2 91 114 IPR003591 -
Cca08g00943 930 SMART LRR_typ_2 450 474 IPR003591 -
Cca08g00943 930 SMART LRR_typ_2 308 335 IPR003591 -
Cca08g00943 930 SMART LRR_typ_2 237 261 IPR003591 -
Cca08g00943 930 SMART LRR_typ_2 426 449 IPR003591 -
Cca08g00943 930 SMART LRR_typ_2 520 544 IPR003591 -
Cca08g00943 930 ProSiteProfiles Protein kinase domain profile. 634 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00943 930 PANTHER F12K21.25 11 927 - -
Cca08g00943 930 Pfam Leucine rich repeat N-terminal domain 45 63 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00943 Cca-Chr8 22223562 22228205 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00943 121 930 Receptor kinase-like Gene Family AT2G41820 36.725 6.55e-141 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca08g00943 Pkinase 1.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00943 - - gmx:100796647 1290.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00943 08 22223562 22228205 Cca08g00943 08 22223562 22228205 ECH