Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00942 ATGGGCAGGTATGAGTACACCCCCACTTGTTTTCTTAGTATTATGTTCTTCTTTTGTTTCTGTCCTATGGTGTTGTCCCTGCTGTCACAAAACCAAACGGAAACCATGTCCAATCTCTCCAAAAGTCTTGCTTTTCCTGTTACATGGAGTGACTCAAACCCATGTGCATGGAAGGGAGTGACTTGTGACAATACCGATTCCTCCGTAGTAGGGGTTTCTCTATCTGGGTTTTCACTCTCTTCTTCTGACTTTCTTCCTGTTGTTTGCAAAATTGAAACTTTGGAGCATCTTGATGTCTCTAACAACCGTCTGAGCTCAATCCCAGATGGTTTCATCACTGAGTGTGGGAAGATTAAGGGGTTGAAGCTGTTGAATTTCAGTAAAAACCATTTAGAAGGTGTTTTACCTACTTTTAGTGGTTTTGATGGATTGGAAACCCTTGACATGTCTTTCAATCACTTGACAGGGAGGGTTGGTTTAGAGTTAGATGGGTTGGTTAGCCTCAAAAGTTTGAATCTTAGTTTCAATAAGTTCATGGGGTCTCTTCCTACCAAACTGGGAAAGTCCATGGTTTTGGAGTGGCTTGTGCTTTCTAACAATCACTTTAATGGAGAAATCCCTGATGAATTGTTTAGTTATGAAAATTTGACTGGGATTGATTTTAAGGAAAATGAACTTTCCCAGTCTATTCCTACCAATATTGGAAGGCTTTCTAAATTGGAAACTTTGATCCTTTCCTCTAATAAACTCGTTGGAGAAATTCCAACTTCACTTTTGAACCTCACCAAACTTTCAAGATTTGCAGCAAATCTGAACACTTTCACAGGTTCTGTACCTCCTGGGATTACAAAATATCTCACAAATTTGGATCTCAGTTTTAATAAATTGTCTGGGCCCATTCCAGAAGACCTTTTATCTCCATCACAGTTGCTGGTTGTAGATTTGTCCAATAATCATTTAAGGGGGTCATTACCTACAAAAGTTTCTCCAAGCTTGTTCAGGTTGAGGTTTGGGGGCAATCATCTGAGTGGAAATATTCCTTCAGATGGTTTTGCAACTGTTGAAAATTTGACATACTTGGAGCTGGATGACAATGAGTTCATCGGATCAATACCGGCTGGTTTGGGTTCTTGCAGGAATTTGGCATTGCTGAATTTAGCTCAGAATGACTTGAGTGGTGCATTGCCTCCACAGCTTGGTAATCTTAGCAATCTTCAAGTCTTGAAGCTTCAATTAAACAACCTTAGTGGTACAATCCCATATCAATTTGGCCAACTTCTTAAGTTGTCAACGCTGAATTTGAGCTCGAATTCTCTGGGTGGATCAATTCCATCTGAGATAACAAGTTTGAGCAGTCTTACTATGTTGCACTTGCAAAGCAACAATCTGAATGGTTCCATACCGACATTCATTAGCAACCTAAAATCTCTTTTAGAGCTTCAACTTGGGCAAAACCAGCTAAGTGGTGAGATTCCAAGCATGCCAGTCAGTCTGCAGGTTTCACTGAATCTTAGTAGCAACCACTTTAGTGGTCCTATTCCTGACCGTTTTCATACTTTGTTTAGTCTGGAAGTCTTGGATCTCTCAAATAACAATTTTACTGGTCCAGTCCCCGATTATCTAACAGAATTGTCAGCTTTGACACTGTTGTTACTTTCTAACAATCAGCTGTCTGGTGAAATTCCAAATTTTAGTCAACACGTGCATGTTGAATATGATGGAACTTATCTGAAAAATACTTCTGCCCAGGACAACCCATTACTCAACACTTCCACTAAGAAGGGAATATCTGTTGCTGTTGCAATTCTCATTGCAATTGTAGCAGCTATTTTTCTTGTTGGCCTAGTCACCCTGCTGGTTGTGTCCGTGTCACGACACTATTACAGGGTTAATGACGAGCATTTACAGTCAGCAGAAGATCATCAGCATCCTCAGGTAGTCCAAAGTAATGTATTAACTCCTAATGGAATACACAGGTCAAGCATTGACTTCTCCAAAGCAATGGAAGCTGTTGCTAAATCATCAAATGTTACTCTGAAAACAAGATTTTCAACTTATTACAAGGCCGTCATGCCATCGGGATCAATCTATTTTGTCAAGAAACTGAACTGGTCTGACAAGGTATTGCCGATTGGAAGTCATGATAAATTTGGGAAAGAGCTAGAAGTCTTGGCAAAATTGAACAATTCAAATGTTATGACTCCTTTGGCTTATGTTCTGTCCACTGATTCTGCTTATATACTATATGAGTATATCTCAAATGGTTCCCTTTTTGATGTTCTTCATGGAAGCATGGATTCCTCTTTAGATTGGGCTAGTAGATACAGTATAGCAGTTGGGGTTGCTCAAGGACTCTCTTTTCTTCACGGATTCGCCTCTAGTCCAATACTACTTCTTGATCTATCAAGTAAAAGTATTATGCTGAAGTCCCTCAAGGAGCCTCTAGTTGGGGATATTGAACACTACAAGGTGATTGATCCCTCAAAGAGTACAGGGAATTTTTCTGCAGTTGCTGGTTCAGTTGGTTATATTCCTCCTGAGTATGCATACACAATGACTGTCACAATGGCTGGGAATGTCTACAGCTACGGTGTCATTCTGCTTGAACTTCTGACAGGAAAACCTGCAGTGACTGAAGGAACGGAATTGGTCAAGTGGGTTTTGCGTTATTCGGCAAACCATGATTACATTCTTGATTTTAATGTCAGTAGAACATCACAAGCAGTCAGAAACCAGATGCTTGCAATTCTCAATATTGCTCTTCTTTGTGTTAATACATCCCCAGAAACAAGACCAAAGATGAAGAGTGTGCTACGCATGCTCCTAAATGCTAGATGA 2838 0.401 MGRYEYTPTCFLSIMFFFCFCPMVLSLLSQNQTETMSNLSKSLAFPVTWSDSNPCAWKGVTCDNTDSSVVGVSLSGFSLSSSDFLPVVCKIETLEHLDVSNNRLSSIPDGFITECGKIKGLKLLNFSKNHLEGVLPTFSGFDGLETLDMSFNHLTGRVGLELDGLVSLKSLNLSFNKFMGSLPTKLGKSMVLEWLVLSNNHFNGEIPDELFSYENLTGIDFKENELSQSIPTNIGRLSKLETLILSSNKLVGEIPTSLLNLTKLSRFAANLNTFTGSVPPGITKYLTNLDLSFNKLSGPIPEDLLSPSQLLVVDLSNNHLRGSLPTKVSPSLFRLRFGGNHLSGNIPSDGFATVENLTYLELDDNEFIGSIPAGLGSCRNLALLNLAQNDLSGALPPQLGNLSNLQVLKLQLNNLSGTIPYQFGQLLKLSTLNLSSNSLGGSIPSEITSLSSLTMLHLQSNNLNGSIPTFISNLKSLLELQLGQNQLSGEIPSMPVSLQVSLNLSSNHFSGPIPDRFHTLFSLEVLDLSNNNFTGPVPDYLTELSALTLLLLSNNQLSGEIPNFSQHVHVEYDGTYLKNTSAQDNPLLNTSTKKGISVAVAILIAIVAAIFLVGLVTLLVVSVSRHYYRVNDEHLQSAEDHQHPQVVQSNVLTPNGIHRSSIDFSKAMEAVAKSSNVTLKTRFSTYYKAVMPSGSIYFVKKLNWSDKVLPIGSHDKFGKELEVLAKLNNSNVMTPLAYVLSTDSAYILYEYISNGSLFDVLHGSMDSSLDWASRYSIAVGVAQGLSFLHGFASSPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGNFSAVAGSVGYIPPEYAYTMTVTMAGNVYSYGVILLELLTGKPAVTEGTELVKWVLRYSANHDYILDFNVSRTSQAVRNQMLAILNIALLCVNTSPETRPKMKSVLRMLLNAR 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00942 945 SMART LRR_typ_2 91 114 IPR003591 -
Cca08g00942 945 SMART LRR_typ_2 520 544 IPR003591 -
Cca08g00942 945 SMART LRR_typ_2 450 474 IPR003591 -
Cca08g00942 945 SMART LRR_typ_2 354 378 IPR003591 -
Cca08g00942 945 SMART LRR_typ_2 402 425 IPR003591 -
Cca08g00942 945 SMART LRR_typ_2 165 189 IPR003591 -
Cca08g00942 945 SMART LRR_typ_2 237 261 IPR003591 -
Cca08g00942 945 SMART LRR_typ_2 426 449 IPR003591 -
Cca08g00942 945 Pfam Leucine rich repeat 93 154 IPR001611 GO:0005515
Cca08g00942 945 Pfam Leucine rich repeat 501 557 IPR001611 GO:0005515
Cca08g00942 945 Pfam Leucine rich repeat 192 250 IPR001611 GO:0005515
Cca08g00942 945 Pfam Leucine rich repeat 403 463 IPR001611 GO:0005515
Cca08g00942 945 Gene3D Phosphorylase Kinase; domain 1 636 751 - -
Cca08g00942 945 ProSiteProfiles Protein kinase domain profile. 672 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00942 945 Gene3D Ribonuclease Inhibitor 27 189 IPR032675 -
Cca08g00942 945 SUPERFAMILY Protein kinase-like (PK-like) 683 941 IPR011009 -
Cca08g00942 945 SUPERFAMILY L domain-like 38 347 - -
Cca08g00942 945 Gene3D Ribonuclease Inhibitor 190 283 IPR032675 -
Cca08g00942 945 Pfam Leucine rich repeat N-terminal domain 45 63 IPR013210 -
Cca08g00942 945 Gene3D Ribonuclease Inhibitor 284 593 IPR032675 -
Cca08g00942 945 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 942 - -
Cca08g00942 945 ProSiteProfiles Leucine-rich repeat profile. 93 114 IPR001611 GO:0005515
Cca08g00942 945 SUPERFAMILY RNI-like 254 563 - -
Cca08g00942 945 PANTHER F12K21.25 11 942 - -
Cca08g00942 945 Gene3D Transferase(Phosphotransferase) domain 1 752 945 - -
Cca08g00942 945 PRINTS Leucine-rich repeat signature 94 107 - -
Cca08g00942 945 PRINTS Leucine-rich repeat signature 426 439 - -
Cca08g00942 945 Pfam Protein kinase domain 683 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00942 Cca-Chr8 22196639 22200824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00942 121 945 Receptor kinase-like Gene Family AT2G41820 37.879 1.43e-153 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca08g00942 Pkinase 3.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00942 - - gmx:100796647 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00942 08 22196639 22200824 Cca08g00942 08 22196639 22200824 ECH